Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08204 ATGGAAGAACTACCTATTGATTTGCCTCCTGGTTTCAGATTCAACCCTAATGATGATGAAATCATTACTTGTTATTTGATCAACAAAGTTTTGAATACAAACTTTAGTGCAATTGCAATTGGTGAAGTTGACTTGAACAAGTGCGAGCCATGGGATTTACCTAAGAAAGCAAAGATGGGAGAGAAAGATTGGTATTTCTTTAGTGAAAGAGATAGAAAGTATCCAACAGGAAGAAGAACAAATAGATCAACTGAATTAGGTTATTGGAAAGCTACTGGAAAAGATAAAGAAATATATAAAGGGAAAAGTAAACAACTTGTTGGAATGAAGAAAACTCTTGTGTTCTATAAAGGGAGAGCTCCAAAGGGAGAGAAAACTAATTGGGTTATGCATGAGTTTAGATTGGATGGAAAATTAGCAACTTGTAATCTTCCTAAGGATGCTAAGGATGAATGGGTTGTGTCAAGAATCTTCAATAAGAACAACAATGAAATAAAGAAAACATCATCAATTCCCAATCTTTTAAGGATAAACTCAATAAGTGATGATTTATTGGATTTTTCTTCACTTCCATCTCTCATGGATGATACTCCTTTTGAAATCAACAACACCATTGATCATCAACAACATCGTGGTGATTTCAAAGAAACCAACTCATCATCAAATGGTTGCTATTTTCCAAGCTACTTAATCAACAATGAAATCAATCTCACAAACCAAGAGAAATTGAATATTCCAAAAACACCCTTGAACCATAACATGTTATCAAATGATTCTTATATGAATCATCAATGGAACAAAGAGTGCAAGATGGAACAATTCTCTACCAATAATTCTTTGTTAAGTGTTTCACAAGATACATGTTTGAGTAATGAAATAAACAATGACATATCTTCTGTGGTCTCAAAGCAAGAAAATATGGGAAGGAATACAAGTTTGTATGAAGATTATCAATATTTGTTTAATGGCTATTGA 975 0.3262 MEELPIDLPPGFRFNPNDDEIITCYLINKVLNTNFSAIAIGEVDLNKCEPWDLPKKAKMGEKDWYFFSERDRKYPTGRRTNRSTELGYWKATGKDKEIYKGKSKQLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLDGKLATCNLPKDAKDEWVVSRIFNKNNNEIKKTSSIPNLLRINSISDDLLDFSSLPSLMDDTPFEINNTIDHQQHRGDFKETNSSSNGCYFPSYLINNEINLTNQEKLNIPKTPLNHNMLSNDSYMNHQWNKECKMEQFSTNNSLLSVSQDTCLSNEINNDISSVVSKQENMGRNTSLYEDYQYLFNGY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08204 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 257 - -
Vifa1g08204 324 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Vifa1g08204 324 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Vifa1g08204 324 FunFam NAC domain-containing protein 100-like 17 164 - -
Vifa1g08204 324 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Vifa1g08204 324 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08204 Vifa-Chr1 1280946422 1280947939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08204 2 316 NAC Transcription Factor Family AT5G18270 52.853 2.86e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g08204 NAM 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08204 - - psat:127126114 598.201