Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08202 ATGGGCTTAAGTAGTAAGAACAAAGCACATGGGCTTAAGCAAAAACTGAGCTGGGTTGAGGAGAGATGGAGCGGGTCGTTGGAAGACCCGGATCCAGGAAGAAGAAGTGAAACGCAAAGCTGTACGAAAGAAGAACCCTTGGAACGAAGGTGCCATGGCCGCCGCCGGATCTCTCTTCTTCCTCCTTGTTCCGATCCACTTCGTTTCTCGAAGTTGGATCCTGTGATGAATCATGTGGTTTTGGAGGATGATATTGAGGAAATGGTGATGAAGAACCAAGAGGCAGTGAATCTTATCAGGCACATAGAGGATCCACAAGAAGCAGCTGAATGCCTAGCTAAGGAAGCATTGGTTAGGAGGAGCAAAGGTAACATTTCATGTTTAATCATTCGATTCGATTGA 402 0.4652 MGLSSKNKAHGLKQKLSWVEERWSGSLEDPDPGRRSETQSCTKEEPLERRCHGRRRISLLPPCSDPLRFSKLDPVMNHVVLEDDIEEMVMKNQEAVNLIRHIEDPQEAAECLAKEALVRRSKGNISCLIIRFD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08202 133 SUPERFAMILY PP2C-like 89 133 IPR036457 -
Vifa1g08202 133 Gene3D - 77 133 IPR036457 -
Vifa1g08202 133 MobiDBLite consensus disorder prediction 23 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08202 Vifa-Chr1 1280837610 1280838555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08202 89 132 PP2C-type Phosphatase Gene Family AT3G23360 77.273 3.80e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08202 K19704 - gmx:100794054 86.6557