Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08193 ATGTACTACCATCAACATGAAGAAGTAAGGAACATGCATGCTTTAAGGATGCAAATGCAAGAAAGAGGAAATGGAAGTATAGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCAAGACTAAAATGGACACCTGATCTTCACCAACGTTTCATCGAAGCCGTCACTCAACTTGGAGGAGCAGATAAAGCTACACCAAAAACAGTATTGAAACTTATGGGAATTCCTGGACTTACATTATACCATTTAAAGAGTCACCTACAGAAGTATAGGATCAGTAGAAGTACAAATGGTCACACTAGTAAAATTGCAGCAACACCAACCACTGAGGTGGAAAGAAGAATGTTAGAACCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGATATAAATGAAGCATTAAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAACTTGAGGTACAGCGACACTTACAATTACGTATAGAGGCTCAAGGAAAGTACCTTCATTCAGTGCTTGAAAAAGCTAAGGAGACATTAGGAAAACAAAACTTAGAAATAAAAGAATTGAATATGATTTGGCCTCAACAAACACAACAAGTTGAAGCCATTGGTTATTCAATGGGAAATTTCTTAACCAATAGTGAGGATTCTCAAAGAGACCAAGAAGTGCATAACAAAGGCATCATTTCGAGACCATATAATGGCACATTTTGTGATGAAGTGAAGGAGAATATGATGTTTCTTTCCTCATCAAATGATAAAGTACTAAAAGGATCGAATGGAGTATTAGAAAATAGCTCTAGCCTCTTATCTATGAATATAGGAAGAGTTCATGAAGAAGAATTGTTTTTTAAGAGAACTATTTCAAAGGAAAATTTAAAGGGTGAAGAATGGAAGAGAAGAAAAAGTAGTGAAACTAGTGGAATGCAACTTAAACTTAATAGTGAAAAAATTTCTCAAGATTATAGACTAGCTAACTTTGAAGTGAAATTAGACTTGAATTCTCATGATAACAATGATGCTTCTTCTCACTGCCAAAAATTTGATTTGAATGGGTTCAGCTGGAATTGCTAG 1089 0.3489 MYYHQHEEVRNMHALRMQMQERGNGSIDSGLVLSTDAKPRLKWTPDLHQRFIEAVTQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISRSTNGHTSKIAATPTTEVERRMLEPSGIHMKDLSIGLQTNKNSDINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLHSVLEKAKETLGKQNLEIKELNMIWPQQTQQVEAIGYSMGNFLTNSEDSQRDQEVHNKGIISRPYNGTFCDEVKENMMFLSSSNDKVLKGSNGVLENSSSLLSMNIGRVHEEELFFKRTISKENLKGEEWKRRKSSETSGMQLKLNSEKISQDYRLANFEVKLDLNSHDNNDASSHCQKFDLNGFSWNC 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08193 362 FunFam Myb family transcription factor 37 95 - -
Vifa1g08193 362 Gene3D - 37 95 - -
Vifa1g08193 362 Coils Coil 139 159 - -
Vifa1g08193 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 95 IPR017930 -
Vifa1g08193 362 Pfam Myb-like DNA-binding domain 40 91 IPR001005 -
Vifa1g08193 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 38 92 IPR006447 GO:0003677
Vifa1g08193 362 Coils Coil 177 197 - -
Vifa1g08193 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 272 IPR044848 GO:0003700
Vifa1g08193 362 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Vifa1g08193 362 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08193 Vifa-Chr1 1279685949 1279687881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08193 28 189 G2-like Transcription Factor Family AT1G79430 53.293 2.84e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g08193 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08193 - - psat:127126075 622.854