Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08190 ATGCAGATCTTCGTCAAAACCTTAACGGAAAGAACCATCACCCTCGAGGTTGAATCCTCCGACACAATCGACAATGTCAAAGACAAGATCCCGGACAAAGAAGGGATACCACCGGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAAGACGGCCGCACTCTCGCTGACTACAACATCCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTCCGTGGTGTCGCCAAGAAGCACAAGAAGAAGACGTACACCAAGCCGAAGAAGATTAAGTACAAGCATAGGAAGGTGAAGCTTGCTGTTCTGCAGTTTTACAAGGTTGATGATTACTGGCGGCGCAAGGTTGAGGAGAATATGAGGGAATCGTGA 372 0.4946 MQIFVKTLTERTITLEVESSDTIDNVKDKIPDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGVAKKHKKKTYTKPKKIKYKHRKVKLAVLQFYKVDDYWRRKVEENMRES 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08190 123 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vifa1g08190 123 SUPERFAMILY Ubiquitin-like 1 92 IPR029071 -
Vifa1g08190 123 Gene3D - 1 82 - -
Vifa1g08190 123 PANTHER UBIQUITIN 1 87 - -
Vifa1g08190 123 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vifa1g08190 123 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vifa1g08190 123 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vifa1g08190 123 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vifa1g08190 123 FunFam Polyubiquitin 3 1 76 - -
Vifa1g08190 123 Gene3D - 83 123 IPR038582 -
Vifa1g08190 123 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vifa1g08190 123 CDD Ubl_ubiquitin 1 75 - -
Vifa1g08190 123 SMART ubq_7 1 72 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08190 Vifa-Chr1 1279252395 1279252766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08190 1 109 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 91.743 4.48e-56 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08190 K02977 - atri:130823869 175.637