Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08182 ATGGCAGAAATTGCAGTATCATTTGTTTTACAAGAACTAGGCCAATTTGTAATAAAAGAAACTAGCCAATATACAGTAGAAGAAAGAAATTCAGTAGCAGGGATTGAAAGAGACTTCAATGATATCAAAGATGAACTTGAGAGCATCCAAGCCTTCCTCAAGGATGCAGACACAAAGGCTGCTGCTGATGATGATGGATCCAATGGAGTCAAAACTTGGGTGAAGCAGGTGAGAGAAGCGTCTTTTCGCATAGAAGATGTGATTGATTACTACAACATGTTTTTGGCAGAGAGGGCCAGTCATTCTATATTCAGATCTGCACTCCAAATGATTCCTGGTTTGATCAAAACCATGAATCCGCATCACCAGATTGCTTCTGAGATTCAAGACATCAAGTTATCACTTGGTAGAATCAAAGAAAGAAGTACAAGGTTCGAGTTTCTGTCTGAAAATGAAGCAGGAAGGACTAAAGCTCCTAGAATTGGTGACCCTCGAATGGCTCCGTATTTCATTGAAGAGACTCAAGTTGTAGGATTTGAGTCCGCGCGAGATGAATTGGTCAGATGCTTGGTGGAGGAAAACAATGAGCTCATGTTGGTTGTTGTGGTTGGCATGGGAGGACTCGGGAAAACTACTCTCGCAAAGCATGTTTTTGATAGCCAGCTAGTGAAAAAGAACTTTGATTGTAGATCTTTCATCACTGTTTCGCAATCGTACACCATCAGAGAGCTGTTGACAGAAATGATAAAGAAATTTTGCAAGGACAGCAACGAGCCTATTCCAAGGGGTCTGCAGAATATGGATGATGAAACTTTGATTAATCAAGTGAGACAATACCTTGAGTCAAAAAGGTACTTGGTTTTATTTGATGATGTCTGGAAAGATAATTTTTCTGATGGGATTGAACATGCCTTAATTAGTAATAACAAAGGAAGTAGAATCATTGTGACTACTAGAAAAATGCATGTAGCTGATTATTTTAGGAAATCTTTTCCTGTTCATGTCCATGAGCTACAACGTTTGCCTCCAGACAAAGCATGGGAGCTGTTTTGCAACAAGACGTTTAGAGGGCACTGTCCAACAGAACTTGAGGAGATGTCCAGAGAAATTGTTCAAAAATGTGGAGGGCTACCATTAGCTATTGTGGCCATCGGTGGTCTTTTGTTAACAAAAGCTAAAACCCTCATTACAGCTACTCAAAATCACGAATATCCGTCAACACAAAGACATCATAACGCTCACAAACAACACAGAGAATCAACGGATAGCAGAAACTGA 1278 0.4006 MAEIAVSFVLQELGQFVIKETSQYTVEERNSVAGIERDFNDIKDELESIQAFLKDADTKAAADDDGSNGVKTWVKQVREASFRIEDVIDYYNMFLAERASHSIFRSALQMIPGLIKTMNPHHQIASEIQDIKLSLGRIKERSTRFEFLSENEAGRTKAPRIGDPRMAPYFIEETQVVGFESARDELVRCLVEENNELMLVVVVGMGGLGKTTLAKHVFDSQLVKKNFDCRSFITVSQSYTIRELLTEMIKKFCKDSNEPIPRGLQNMDDETLINQVRQYLESKRYLVLFDDVWKDNFSDGIEHALISNNKGSRIIVTTRKMHVADYFRKSFPVHVHELQRLPPDKAWELFCNKTFRGHCPTELEEMSREIVQKCGGLPLAIVAIGGLLLTKAKTLITATQNHEYPSTQRHHNAHKQHRESTDSRN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08182 425 MobiDBLite consensus disorder prediction 402 425 - -
Vifa1g08182 425 FunFam Probable disease resistance protein At1g61300 163 330 - -
Vifa1g08182 425 Pfam NB-ARC domain 183 397 IPR002182 GO:0043531
Vifa1g08182 425 Gene3D - 4 125 - -
Vifa1g08182 425 Gene3D - 167 332 IPR027417 -
Vifa1g08182 425 MobiDBLite consensus disorder prediction 407 425 - -
Vifa1g08182 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 394 IPR027417 -
Vifa1g08182 425 CDD RX-CC_like 2 140 IPR038005 -
Vifa1g08182 425 PRINTS Disease resistance protein signature 199 214 - -
Vifa1g08182 425 PRINTS Disease resistance protein signature 279 293 - -
Vifa1g08182 425 PRINTS Disease resistance protein signature 374 388 - -
Vifa1g08182 425 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 3 407 IPR039203 GO:0050832
Vifa1g08182 425 Pfam Rx N-terminal domain 5 98 IPR041118 -
Vifa1g08182 425 Gene3D - 341 421 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08182 Vifa-Chr1 1278088038 1278089315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08182 177 393 WRKY Transcription Factor Family AT5G45050 26.577 4.78e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08182 K13457 - vun:114181831 441.81