Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08180 ATGGAGAATGAGCAATGGTGCACCATATGCTCTAAAATGGTGAACCCAATGAATGGATATGAAAACAAATGTCCCTTTTGTGATACACAATTTAGTGATGGAATTGAAAATCTAAGTGATCACCATAATAGTGATGCTATTGATTTAAGGTCAGCTTGGGTTTTCTCACTTTATGCACCAATTTTTCTTGGTTTGATGAATGCTTTTAGTCCTTCTCTAGCTACAATTTCTTCACAAGAAAGTATCACATCAAGAAATGATGAAGATTTTGAACAAGAGAGAGGAAATTACAATGAACTTGTAATTGGAAGAAGGAGAAGAACTTCAACTTACATGATGCATCTCTTTAGAGGACTTCATGTTAGAATGGTTTCAGAAAATGAAAACATAGAACAAAATAGAAACATTATTGATAATACTAATAATACTTATAACAATAACAATAATAATAGTAATAATAATAACAATATACTAGTTATTGATCCATTCAATGAAGGTGCATTAATTGTGAGAGGACCTAATTTGAATCACACAAATTTAAATAGGTCAAATGAAAATAATATTAATACTAGTACTATTGGATCTTTGAATGATTTTGTGGATGGAAGTGGATTTGATTTATTGCTACAACATTTGGCACAAATAACACCTAGTGGTTATGCAAGTGTGAATCCTCCAACAAAGAAGGAAGCAATTGAAGCAATGGAAAACATGATTAATGATGAGAAATTGCAATGTACTATATGCTTAGAAGATGTTGATATTGGAAGTGTTGCTAAAGAAATGCCATGCAAGCATAAGTTTCATAGTGATTGTATTGTTTCATGGCTTAAACTACATAGTTCTTGTCCAGTTTGTAGGTTTCAAATGCCTTGTGAGGATTCAAATGTTTTGGCTAATTTGGAAAATGGAAATAGAGAAATTCAGAATAATGAGGTTGGGAGGAGAGGTAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTTCGATCTTTTAATGATTATCTTCCTTTTCCTTGA 1017 0.3206 MENEQWCTICSKMVNPMNGYENKCPFCDTQFSDGIENLSDHHNSDAIDLRSAWVFSLYAPIFLGLMNAFSPSLATISSQESITSRNDEDFEQERGNYNELVIGRRRRTSTYMMHLFRGLHVRMVSENENIEQNRNIIDNTNNTYNNNNNNSNNNNNILVIDPFNEGALIVRGPNLNHTNLNRSNENNINTSTIGSLNDFVDGSGFDLLLQHLAQITPSGYASVNPPTKKEAIEAMENMINDEKLQCTICLEDVDIGSVAKEMPCKHKFHSDCIVSWLKLHSSCPVCRFQMPCEDSNVLANLENGNREIQNNEVGRRGRNGRRNWFPVLRSFNDYLPFP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08180 338 ProSiteProfiles Zinc finger RING-type profile. 246 287 IPR001841 -
Vifa1g08180 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 135 291 - -
Vifa1g08180 338 SMART ring_2 246 286 IPR001841 -
Vifa1g08180 338 Pfam Ring finger domain 245 287 IPR001841 -
Vifa1g08180 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 293 IPR013083 -
Vifa1g08180 338 FunFam E3 ubiquitin-protein ligase RNF181 216 293 - -
Vifa1g08180 338 SUPERFAMILY RING/U-box 233 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08180 Vifa-Chr1 1278043487 1278044503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08180 145 333 C3H Transcription Factor Family AT1G26800 28.421 4.86e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08180 - K11982 cam:101512035 492.271