Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08162 ATGGTGGGAAGTTTGAATGAAGAAGAAATCAAGTGGCCAGCATGGTTGCAACCACTTCTCCAAACAAGATTCTTTGTTCAATGCAAAGTGCATGCAAATTCCAATAAAAGTGAATGCAATATGTATTGCTTGGATTGTATGAATGGAGCTATTTGTTCAACTTGTCTAGCTTCTCATAAAGAACACAAAGTTATTCAGATAAGAAGGTCTTCATACCATGATGTGATAAGAGTATCTGAAATACAAAAAATAGTGGACATAACCGGAGTTCAAACATACGTTATAAATAGTGCAAAGATTGTGTTCTTGAATGAAAGACCTCAACCTAGGCATGGGAAAGGAGTCACCAATACTTGTCAAGTTTGTGAAAGAACTCTTCTTGATTCATTCACCTTCTGCTCCCTTGGTTGTAAGATAATTGGAACCTCCAAGAAACTTCAAAAGCAAAAAAAGTTGAGTGAAGAAGATGGTTCATATGATGAAGAATCAAATAGTGACAGAAACAAAAACAAAATTCAGAGCTTTACACCTTCAACACCACCACCTTACAGAATAGCTAAGAGAAGGAAAGGGATTCCTCGTAGAGCTCCATTGGGTGGAAGTCTTATAGAATACTTATACTAA 624 0.3638 MVGSLNEEEIKWPAWLQPLLQTRFFVQCKVHANSNKSECNMYCLDCMNGAICSTCLASHKEHKVIQIRRSSYHDVIRVSEIQKIVDITGVQTYVINSAKIVFLNERPQPRHGKGVTNTCQVCERTLLDSFTFCSLGCKIIGTSKKLQKQKKLSEEDGSYDEESNSDRNKNKIQSFTPSTPPPYRIAKRRKGIPRRAPLGGSLIEYLY 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08162 207 Pfam PLATZ transcription factor 68 139 IPR006734 -
Vifa1g08162 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 198 - -
Vifa1g08162 207 MobiDBLite consensus disorder prediction 150 191 - -
Vifa1g08162 207 MobiDBLite consensus disorder prediction 150 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08162 Vifa-Chr1 1274831069 1274832685 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vifa1g08162 PLATZ 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08162 - - gmx:100796834 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01300 6 453432441 453433958 Vifa1g08162 1 1274831069 1274832685 ECH
Vifa1g08162 1 1274831069 1274832685 Vifa1g08162 1 1274831069 1274832685 ECH