Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08147 ATGTTGTCTGTAGCTCCTTCTCTTGATGCTAAACAAACCCCAGAACTTGATCAGATAAATCACCAAAAACCCTCTGATTATGTTGATAATCCAGTTTCTAATCAAACTAATCACATTTTTAAATCCAAATTACCTGATATTACAATCTCTAACAACCTCCCACTTCATACCTACTGCTTCGATAAACTTCCTCAAACCGCCGATCGTCCATGCCTCATCGTTGCTTCCTCCGGAAAAATTTACACCTACGCAGAAACTTATCTCCTCTCAAGAAAAATCGCCGCCGGTTTATCCAAACTCGGTATCCAAAAAGGCGACGTCATCATGATTCTCCTCCAAAACTCAGCTGAATTTGTTCTCTCTTTCATCGCCGCATCAATGATCGGCGCTGTCGCAACCACCGCTAATCCGTTCTACACCACCGCTGAGATCTTCAAACAAATAACCGCTTCCAAGACGAAGCTAATCATCACACAAGCAATGTACGTCGACAAACTCCGTCCGAACGAGGCGAACCAGGAGAACGGTGAATTTGACTTTAAGGTGATCACCATCGACGAACCTCCGGTGAATTGTTTACATTTCTCGGTGCTTTCCGAAGCCAATGAGGAGGATTTGCCGGAAGTTGAGATTGATCCCGAAGACGCGCTGGCGCTTCCGTTTTCTTCCGGTACGACGGGACTACCAAAAGGTGTAATTCTAACGCATAAGAGTTTAATAACAAGTGTTGCTCAACAAGTCGACGGCGAGAATCCAAACCTGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTTCTCTCAACAGTGTGCTGTTGTGTGCACTGAGAGCAGGGAGTGCGGTTCTGTTAATGCATAAATTCGAGATCGGGACGTTGCTTGGTTTAATACAGGAACATAAAGTGACGGTGGCGATGGTGGTTCCGCCGCTAGTTTTGGCTTTGGCGAAGAATCCTCAGGTTGCGGAATTTGATCTTAGCTCAATACGGTTGGTGCTGTCCGGAGCTGCGCCGTTAGGGAAGGAGCTCGAAGAGACTCTCCATAACAGAATTCCTCAAGCCGTTTTGGGACAGGGTTACGGTATGACAGAGGCAGGCCCTGTACTCTCCATGTCTTTAGGCTTTGCTAAGCATCCATTCCCAACAAGGTCAGGCTCATGTGGCACTGTTGTAAGAAATGCAGAACTCAAAGTTCTTGACTCTGAAACTGGTCTTTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATCCGAGGCCAACAAATCATGAAAGGATATTTGAATGATGAGAATGCAACAAAAACCACTATTGATGAGGAGGGTTGGCTTCATACCGGTGATGTTGGCTATATAGATGACAATGATGAGATTTTCATAGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCTCCTGCCGAACTTGAAGGCCTTCTCGTAAGCCATCCATCAATTGCAGACGCAGCTGTTGTTCCGCAAAAAGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGACCAAATGGAAATGATTTAACTGAAGAGGCTATAAAGGAGTTTATATCTAAACAGGTGGTGTTTTATAAAAGACTACACAAAGTTTATTTCATTCATGCAATTCCCAAGTCTCCATCTGGAAAGATACTAAGGAAAGACCTGAGAGCTAAGCTTGAACACTCCAATCAAAAGCCTTAG 1731 0.4402 MLSVAPSLDAKQTPELDQINHQKPSDYVDNPVSNQTNHIFKSKLPDITISNNLPLHTYCFDKLPQTADRPCLIVASSGKIYTYAETYLLSRKIAAGLSKLGIQKGDVIMILLQNSAEFVLSFIAASMIGAVATTANPFYTTAEIFKQITASKTKLIITQAMYVDKLRPNEANQENGEFDFKVITIDEPPVNCLHFSVLSEANEEDLPEVEIDPEDALALPFSSGTTGLPKGVILTHKSLITSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMHKFEIGTLLGLIQEHKVTVAMVVPPLVLALAKNPQVAEFDLSSIRLVLSGAAPLGKELEETLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKHPFPTRSGSCGTVVRNAELKVLDSETGLSLGYNQPGEICIRGQQIMKGYLNDENATKTTIDEEGWLHTGDVGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRPNGNDLTEEAIKEFISKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRAKLEHSNQKP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08147 576 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
Vifa1g08147 576 CDD 4CL 49 565 - -
Vifa1g08147 576 FunFam 4-coumarate--CoA ligase 2 471 572 - -
Vifa1g08147 576 Gene3D - 31 469 IPR042099 -
Vifa1g08147 576 FunFam Long-chain-fatty-acid--CoA ligase FadD 41 470 - -
Vifa1g08147 576 Pfam AMP-binding enzyme 65 475 IPR000873 -
Vifa1g08147 576 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 35 567 - -
Vifa1g08147 576 SUPERFAMILY Acetyl-CoA synthetase-like 16 570 - -
Vifa1g08147 576 Pfam AMP-binding enzyme C-terminal domain 484 559 IPR025110 -
Vifa1g08147 576 MobiDBLite consensus disorder prediction 13 30 - -
Vifa1g08147 576 Gene3D - 470 574 IPR045851 -
Vifa1g08147 576 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08147 Vifa-Chr1 1271427759 1271432183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08147 31 482 Monolignol Biosynthesis Gene Families AT1G65060 70.989 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08147 K01904 - gmx:547492 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08147 1 1271427759 1271432183 Vifa1g08147 1 1271427759 1271432183 ECH