Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08145 ATGATGAGGTTGAAGACATATGCTGGTTTTAGTTTGATTGCAACTTTGGCTATTGCATATCATGCATTTAACAGTAGAGGTCAATTTTATCCGGCGATGGTGTATCTTTCAACTTCCAAGATAAGTTTGGTGCTTCTTCTCAATATGGGTTTGGTTATCATGTGTATTTTGTGGCAACTCACAAAGAAGATATTCTTGGGTTCGCTTCGAGAGGCGGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAGATTCTCTTTGCGATTACTATTTTTAGGCAGGATTTTTCGGTTACGTTTCTTGCGATGGTTACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTTGAGTATATTGAGACCACTCCTACTGTGACCGTGTTGTCTCATGTTCGGATTGTGTCTTTTATGGGCTTCCTTCTTCTTGTAGATAGCATTTTCTTATATAGTTCTTTGAAGCATTTGATAGAAACATGGCAGGCTTCTGTTTCTCTGTTCTTTGCTTTTGAGTACATGATACTGGCAACAACAACAGTGTCGATTTTTGTAAAATACGTTTTCTATGTCAGCGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACGTTTTACCTGGAACTTATTAAGGACTTGCTGCACTTGTCCATGTATCTGTGCTTCTTCTTTGTTATTTTTGTAAACTACGGCATTCCCTTGCACCTAATACGGGAGTTGTACGAGACATTTAGGAACTTCAAAATGCAACCCCCCGAAGAGATTGAAGCTAGTGATGCGACTTGTATTATCTGTCGAGAAGAGATGACTGCTGCTAAGAAACTGATATGTGGACACCTTTTTCATGTCCATTGCCTTCGATCCTGGTTAGAGCGACAACATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCAGCCGAAAATGGAACAACTGTTGCTGGGGGTCAGCAAGGATCACAATCAAATGGTCATCGACAGGGTCAAACCGAGCTTGGCAGTGGGGGAGCAACTGATAGTGTGAGTCGCCATCAAGCTAGACTCCAAGCAGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCCCTGCAACTTATTCTGTACGGTACGGTGTTTCTGCTCGGGACAATACCTCTTTCTCTGCAACTGCTTATGAAATCAGTCCTATGCTATCTCCTGGGTACACTACTTATCCCCCGGTTGCTGAATCTAGCAGTAATGATCTTAATGGAGAGCAAGCTTCCAGTGAGCAAGCACAACAGAAGTTTCTTAACACTGGTGTGCCAACAAATGCACCCTTTCCTCCAATGAGACAATCTCTTCCTTCCCAACCACACGCGGCACCTTCCAATTATGGAGAGAGGATTGGAAATGATCGAAATTCCCGAAAGATTGAGTTTGAAGCTCATAAACAAATGTTTCAAGAGCAGATTGAGGTATTATTTGATGATTATGCTGAGAATCCAATGAATATCCCCTTCTCACTGTCTATATTCTCAGTTCCGGCACCCTATTCCAGGATAGTTGCTGATATTGTTACAAGTTTACAACTACTTTTCACAATTAGGCTTCTACAAGCACTTTGTCATGACAAATGA 1632 0.4222 MMRLKTYAGFSLIATLAIAYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTVLSHVRIVSFMGFLLLVDSIFLYSSLKHLIETWQASVSLFFAFEYMILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELIKDLLHLSMYLCFFFVIFVNYGIPLHLIRELYETFRNFKMQPPEEIEASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTTVAGGQQGSQSNGHRQGQTELGSGGATDSVSRHQARLQAAAAAASIYEKSYVYPPATYSVRYGVSARDNTSFSATAYEISPMLSPGYTTYPPVAESSSNDLNGEQASSEQAQQKFLNTGVPTNAPFPPMRQSLPSQPHAAPSNYGERIGNDRNSRKIEFEAHKQMFQEQIEVLFDDYAENPMNIPFSLSIFSVPAPYSRIVADIVTSLQLLFTIRLLQALCHDK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08145 543 PANTHER RING ZINC FINGER PROTEIN 1 486 - -
Vifa1g08145 543 MobiDBLite consensus disorder prediction 321 351 - -
Vifa1g08145 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 318 IPR013083 -
Vifa1g08145 543 SMART ring_2 271 308 IPR001841 -
Vifa1g08145 543 CDD RING-H2_synoviolin 268 309 - -
Vifa1g08145 543 Pfam Ring finger domain 270 309 IPR001841 -
Vifa1g08145 543 SUPERFAMILY RING/U-box 260 315 - -
Vifa1g08145 543 MobiDBLite consensus disorder prediction 442 461 - -
Vifa1g08145 543 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08145 Vifa-Chr1 1271187639 1271190707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08145 1 390 C3H Transcription Factor Family AT3G16090 70.476 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08145 K10601 - gmx:100816441 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08145 1 1271187639 1271190707 Vifa1g08145 1 1271187639 1271190707 ECH