Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08131 ATGGGAACAATAAACTCTCTATGGAATTTTACTAAAAAATTCGTCACAATTGGTCTCATTACTGTCACTGTTTCTGATCGTTATGTCACCGTTGTGCCGGTTCGAGGTGGCTCTATGTCTCCCACTTTTAATCCCAAAACTGATTCTTTCACAGATGATTATGTCTTGGTTGAGAGATTTTGCCTTGAGAAGTACAAGTTTTCACATGGTGATGTAGTTATCTTCCGTTCACCATTGAATTACAAGGAAACACACATAAAGAGAATACTTGCTTTACCGAACGAGTGGTATGTTACTCGTCATAACAATGACGTACTGAGGATTCCGGAAGGACATTGCTGGGTTGAGGGAGACAATGCAGGTTCTAGCATGGATTCAAAATCATATGGATCTGTTCCTTTGGGTCTAGTTCGAGGAAGGGTTACTCATGTTGTGTGGCCTCCTCACAGAATAGGTGCTGTCAAGAACACTAAAACAGAAGGATTACTACCTTCTCTATGA 501 0.4072 MGTINSLWNFTKKFVTIGLITVTVSDRYVTVVPVRGGSMSPTFNPKTDSFTDDYVLVERFCLEKYKFSHGDVVIFRSPLNYKETHIKRILALPNEWYVTRHNNDVLRIPEGHCWVEGDNAGSSMDSKSYGSVPLGLVRGRVTHVVWPPHRIGAVKNTKTEGLLPSL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08131 166 Gene3D Umud Fragment, subunit A 26 160 - -
Vifa1g08131 166 SUPERFAMILY LexA/Signal peptidase 29 154 IPR036286 -
Vifa1g08131 166 CDD S26_SPase_I 31 141 IPR019533 GO:0004252|GO:0006465
Vifa1g08131 166 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 157 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Vifa1g08131 166 FunFam Mitochondrial inner membrane protease subunit 25 159 - -
Vifa1g08131 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa1g08131 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa1g08131 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa1g08131 166 Pfam Signal peptidase, peptidase S26 8 95 IPR019533 GO:0004252|GO:0006465
Vifa1g08131 166 Pfam Signal peptidase, peptidase S26 103 146 IPR019533 GO:0004252|GO:0006465
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08131 39 159 MADS-box Gene Family AT1G29960 34.646 2.33e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08131 K09648 - gmx:100527429 256.529