Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08106 ATGGCGACTCCGAAACCCCAACGAACTCCACAGGAAGTCGAAGACATCATCATCCGCAAAATCTTCCACGTCACCATCACCGCCACCACCGCCACAACAACCGATTCCAGAATCGTTTATCTCGAACTAACCGCCGCCGAAATTCTCAGCGAAGGCAAAGACCTCCTCCTCTCTCGCGACCTAATGGAGAGAGTCCTAATCGATCGTCTCTCCGGCGATTTCTCTCTTTCCGGTGATGAAGCCTCCACGTTTCACTATCTTGTTGGTTGTTACAACCGCGCACACGATGAAGCTAAGAAAATCGTTAACATGAAGGATAAGAATCTTAGGTCAGAGATGGAGAGTGTTGTGAAACAAGCTAAGAAGCTATGTGTTTCTTATTGTAGGATTCATCTCGCGAATCCTGAGCTTTTCGCGAGTAAGAATTCAAATTCGGATACTAGAACAACATCTCCGTTATTGCCGTTGATTATATCGGAGTGTGGAGGTGGCGGTGGAATGGGAGTTTTTGGTGGTGGAAGTGCTGGAGGAGGAGTGAAGAGTCCTCCGGGGTTTTTGGATGAGTTTTTTAGGGATCCTGATTTTGAGAGTTTGGATAGGATTTTGAAAGGGTTGTATGAAGAATTGAGAGGGAGTGTGATGAAGGTTTCTGTTCTTGGAAATTTTCAGGACTCTCTGAGGGTTTTGTTGTTTTTGGTTAGATTACCTGCTGGTGCAAAGTCTCTTGTTAGTCACGAGTGGTGGATTCCCAAAGGTCCTTATATGAATGGTCGTGCTATTGAAATGACTAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCAAACCTTCTTCAAGAGTCAGCCTGATATTGGGCAACAGTGCTTCTCTGACGCGTCAACTCGGCGACCAGCTGACTTATTATCTTCATATACCACCATCAAAACTGTCATGAATACCCTATATGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGATACTCGTGAAAATGTACTTGAATATCTTGCAGAGGTGATCAATTTAAATGCATCTAGGGCTCATATACAGGTTGACCCAATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTGAGTGCTGTCATGCTTCGTCTTTGTGAACCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCTAAATATGTCCACCACTCAAACCGGTTGAAGCTAAGTGGGTTGACTGCCCTTCACGCGTCATCAGAAGAAGTTGCTGAATGGCTTTCTAGTAAAAACCCAGCTAAGGCAGGGGAAATGAATCAATATAATGATGGTGAGAAACGTCTGCAACAATCTCAAGAGGCCAGTAGTTCTGGTAGCAATAATGCTAGTGATCTTTCAAATGAAAATTCTGCACGCGCAAAATATTCATTTATATGTGAATGCTTCTTTATGACTGCAAGAGTACTCAACTTGGGGCTTTTAAAAGCATTTTCCGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGTGAAGATACTCTATCTACACTTAAAAACATGCAGGGGCAGTCATCCTCTCCTCAATTGGAATTGGATATAACTCGACTTGAGAAAGAGCTGGAGTTGTATTCTCAGGAAAAGCTTTGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAGAATGCACTTTCCTTCTACCGCTTGATGATCGTTTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCAACATGCCCAATGGAATTTTCTGCCATGCCTGAACATTTTGTAGAAGATGCCATGGAGCTTCTAATATTTGCTTCCCGGATTCCAAGGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTCATGGGCAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTTGAAGTTCTGAACAGCTGGATGCCTCGTAGGAGTGGCTCATCTGCTACAGCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTATATGTTGACATTGAGTTCACCGGTTCTCACACGCAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCCGAACTTCTTGAGTACTTGTGGAATGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGAATTGGAGGCTGAAATGTCAAATACTGCTGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAAAGAACCCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTGCTTCCTGAGATGGTTGATAGAGTGGCCAGTATGCTCAATTACTTTTTGCTACAATTGGTTGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAAAAATATGAATTTCGTCCAAAGCATTTACTAAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGTGACACAAATTCCATCTTCCCATCTGCTATCTCAAAGGATGGCCGATCATACAATGATCAGTTGTTCAGCTCTGCTGCAGACGTCCTTCGTAGAATTGGTGAAGATGGAAGAATTATACAGGAATTTATTCAGCTAGGTGCTAAAGCCAAAATTGCTGCTTCAGAGGCCATGGATGCCGAAGCTACTCTTGGAGAAATACCAGATGAATTCCTGGATCCAATCCAATACACTTTGATGAAAGATCCAGTTATCTTGCCTTCTTCAAGGATTACAGTTGATCGTCCTGTCATCCAGAGGCATCTTCTCAGTGATAGTAGTGACCCATTCAACCGTTCTCATCTTACCGCCGATATGCTGATTCCTGATGTTGAACTCAAAGCAAGAATTGAAGAGTTTATCAGGTCCCAAGAAATGAAGAAACACGGCGGTGAAGGCCTAAGCATACAAAGTACCAAGGCCACCATTCAAACCACAGATAGTGCGGAAATGTTGATTGATTAG 3048 0.4252 MATPKPQRTPQEVEDIIIRKIFHVTITATTATTTDSRIVYLELTAAEILSEGKDLLLSRDLMERVLIDRLSGDFSLSGDEASTFHYLVGCYNRAHDEAKKIVNMKDKNLRSEMESVVKQAKKLCVSYCRIHLANPELFASKNSNSDTRTTSPLLPLIISECGGGGGMGVFGGGSAGGGVKSPPGFLDEFFRDPDFESLDRILKGLYEELRGSVMKVSVLGNFQDSLRVLLFLVRLPAGAKSLVSHEWWIPKGPYMNGRAIEMTSILGPFFHISALPDQTFFKSQPDIGQQCFSDASTRRPADLLSSYTTIKTVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVAEWLSSKNPAKAGEMNQYNDGEKRLQQSQEASSSGSNNASDLSNENSARAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLSTLKNMQGQSSSPQLELDITRLEKELELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPSTCPMEFSAMPEHFVEDAMELLIFASRIPRALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNSWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRNAWRQIAKEEEKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKIAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDVELKARIEEFIRSQEMKKHGGEGLSIQSTKATIQTTDSAEMLID 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08106 1015 MobiDBLite consensus disorder prediction 441 462 - -
Vifa1g08106 1015 Coils Coil 522 549 - -
Vifa1g08106 1015 CDD RING-Ubox_UBE4A 917 985 - -
Vifa1g08106 1015 SMART Ubox_2 918 981 IPR003613 GO:0004842|GO:0016567
Vifa1g08106 1015 ProSiteProfiles U-box domain profile. 914 988 IPR003613 GO:0004842|GO:0016567
Vifa1g08106 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 914 992 IPR013083 -
Vifa1g08106 1015 FunFam Ubiquitin conjugation factor e4 a 914 991 - -
Vifa1g08106 1015 Coils Coil 728 748 - -
Vifa1g08106 1015 PANTHER UBIQUITINATION FACTOR E4 3 734 IPR045132 GO:0000151|GO:0030433|GO:0034450
Vifa1g08106 1015 Pfam U-box domain 915 986 IPR003613 GO:0004842|GO:0016567
Vifa1g08106 1015 Pfam Ubiquitin elongating factor core 266 733 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Vifa1g08106 1015 Pfam Ubiquitin elongating factor core 733 898 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Vifa1g08106 1015 SUPERFAMILY RING/U-box 907 987 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08106 1 1015 U-box Gene Family AT5G15400 73.504 0.0 1552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08106 K10597 - gmx:100806175 1670.6