Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08085 ATGGAAGAATCAAACATCATGCGACAAAACAACGTTACTGCTTCTCCAACACCAACAACATCTTACATAGGTGTTCGAAAGAGAAAATGGGGAAAATTTGTATCAGAAATAAGAGAGCCAGGTAAGAAAACCAGAATATGGTTAGGAAGCTATGAAGAGGCACAAATGGCAGCAGCAGCATATGATGTAGCAGCTTTTCATCTCAAAGGTCGCGCGGCGAGGCTCAATTTTCCTGAGTTGGTTGAGAAACTTCCAATGCCAGCAAGTTCGAAAGGCGAGGATATTCGTGTAGCGGCTCAACAAGCAGCATTGCAGTTCAAGAAGAGACCAATATCTGAAGGGGGTGTGAATAGCAATATCAATGGCAATGGTAATGGAAGTGCTAATGTTCCTGCAGTGAGGGTAGGGCTTTCACCTTCTCAAATTCAAGCTATCAATGAGTGTCCTATGGATTCTCCAAATATGTGGATGCAAAGGACAGAAGCAGCACACATGTTTGGATCATTGGAAGTTGATGAATCTAGGAATTATGATGTTTTTGAGTTGAGTGATTGGGAAGAAATTCAGTATGAGTCATTGTGGGACTAG 588 0.4218 MEESNIMRQNNVTASPTPTTSYIGVRKRKWGKFVSEIREPGKKTRIWLGSYEEAQMAAAAYDVAAFHLKGRAARLNFPELVEKLPMPASSKGEDIRVAAQQAALQFKKRPISEGGVNSNINGNGNGSANVPAVRVGLSPSQIQAINECPMDSPNMWMQRTEAAHMFGSLEVDESRNYDVFELSDWEEIQYESLWD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08085 195 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Vifa1g08085 195 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vifa1g08085 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 122 - -
Vifa1g08085 195 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Vifa1g08085 195 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Vifa1g08085 195 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g08085 195 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Vifa1g08085 195 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Vifa1g08085 195 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vifa1g08085 195 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vifa1g08085 195 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08085 Vifa-Chr1 1263435881 1263436468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08085 20 195 AP2-EREBP Transcription Factor Family AT1G71450 48.864 4.71e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g08085 AP2 7.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08085 - - cam:101493379 230.335