Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08082 ATGGGTTGCATTAGTTCCAAACATGTTGTCGCCGGAGCTTCTTCTCCGGCGCCAACCTTCGGAAGAGGTATCAAGGAGGTTGTTCCTTCATCTAAGGTTCATTCTACTTTGTTACCTTTGGATTCAAAATCATCATTAGAGGAAAATAAGAATAGCAAGTTTAATAAAAATGCTTCCAAAAAAAGTAGTAGTACATTCAGCTTTAGAATTGGGTTTACACAAAGGCATGTTGAAGCTGAACAAAATGCTGCTGGTTGGCCTCCTTGGCTTACAGCTTCTGCAGCTGAAGCTGTTCAAGGTTGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTTCGAGCACGCGAAGTTGAAACAGGAAAAATGTTTGCTCTAAAAAAAGTGAGGTTTGATAATTACCAAGCTGAGAGCATAAGATTTATGGCAAGAGAAATAACACTTCTAAGGAGGCTTGACCATCCAAACATAATGAAATTGGAAGGAATAATCACTTCTAGAATGTCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTCGCTGGCCTAGTTTCTCGTCCTGATATCGTTTTCACGGACTCACAGATAAAATGCTACATGAGACAACTATTAAGTGGACTCGAACATTGTCATGTTCGAGGTATCATGCATAGAGACATCAAAGTATCGAATATCTTGTTGAACAATGAAGGTGTTCTTAAGATCGGTGATTTTGGATTGGCAAACACAATTAGTCCTAACAATAAGCATCAATTAACAAGCCGCGTAATAACTCTATGGTATCGTCCTCCCGAGCTCTTGATGGGAGCAACTAACTACGGAGTTTCGGTTGATTTATGGAGCGTTGGATGTGTATTCGCAGAACTTTTTCTTGGCAAACCTATTCTTAAAGGGAGAACTGAGGTTGAACAATTACACAAAGTTTTTAAGCTGTGTGGTTCACCACCTGAAGAGTTTTGGAAAAAGACCAAACTTCCTCATGCAACAATGTTCAAACCTCAGACTAATTACGAAAGCTCGCTTCGGGAGAGGTGCGCAGATTTTCCTGAACCGGCTGTAGGTTTACTCGAAACCTTACTATCCATCGATCCTAGCAACCGCGGAACCGCCTCCTCCGCTCTATTATCTGAGTATTTCAACACTAAGCCATATGCTTGTAATCCATCAAACTTGCCAAAGTATACACCTAGCAAAGAAATGGATGCTAAAGGTTATGAAGAAACATCTAGGAAAAAGACGGGCGATAAAATGCGAGAGGCTGCAACATCTAAAAGGCAACAAAGACGAAACTATAAGGAACAAAACAATTTTGGTAAATCAACTTCAAAGGAGAATATTTCTCAAAATACTAGAAAAGATGATGGTAAAGCAAGTTTTTCAAAGGGAAAAGCAGGATCTATGATTAAAGATCACACTAAGACTTCAATGGAAGCAATGTTAGAGACTTCTCAAAAGCACAATGTTGCTGATGGTAATGGCTATAGTGTACCAGTCCAAATCAAAGGAGGGTCTAATGAATATTCATGGACAAAAAGAAGAAAACAAGATGCATCATCCACATTATCAGATGGATCAAGAAGTAAAATTAGTGCATTGGATCCTAACTTTGCAAAAGGAACATATGATTTATCTAAACAAAGGGTTTCCATGGATTTCAATCCGAAGGAACTAATGAATGCACAAGGGAAAAAAGATGATCAAGGTGCATATTGGAATGACGGCGTGAGACGCGCAGCTCGTAAGTCAAGGTTTGGAAGAGATATATGA 1809 0.3914 MGCISSKHVVAGASSPAPTFGRGIKEVVPSSKVHSTLLPLDSKSSLEENKNSKFNKNASKKSSSTFSFRIGFTQRHVEAEQNAAGWPPWLTASAAEAVQGWIPLKADSFQKLDKIGQGTYSSVFRAREVETGKMFALKKVRFDNYQAESIRFMAREITLLRRLDHPNIMKLEGIITSRMSNSIYLVFEYMEHDLAGLVSRPDIVFTDSQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISPNNKHQLTSRVITLWYRPPELLMGATNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKVFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPEPAVGLLETLLSIDPSNRGTASSALLSEYFNTKPYACNPSNLPKYTPSKEMDAKGYEETSRKKTGDKMREAATSKRQQRRNYKEQNNFGKSTSKENISQNTRKDDGKASFSKGKAGSMIKDHTKTSMEAMLETSQKHNVADGNGYSVPVQIKGGSNEYSWTKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLSKQRVSMDFNPKELMNAQGKKDDQGAYWNDGVRRAARKSRFGRDI 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08082 602 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08082 602 Gene3D Transferase(Phosphotransferase) domain 1 192 434 - -
Vifa1g08082 602 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vifa1g08082 602 SUPERFAMILY Protein kinase-like (PK-like) 104 398 IPR011009 -
Vifa1g08082 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vifa1g08082 602 CDD STKc_CDK9_like 109 393 - -
Vifa1g08082 602 MobiDBLite consensus disorder prediction 413 446 - -
Vifa1g08082 602 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08082 602 MobiDBLite consensus disorder prediction 520 550 - -
Vifa1g08082 602 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Vifa1g08082 602 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08082 602 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Vifa1g08082 602 MobiDBLite consensus disorder prediction 403 483 - -
Vifa1g08082 602 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Vifa1g08082 602 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08082 Vifa-Chr1 1263182729 1263185665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08082 101 441 Core Cell Cycle Gene Families AT5G10270 47.191 1.56e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa1g08082 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08082 - - gmx:100790917 909.442