Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08076 ATGGGATTCTGGGGGATTGAAGTGAAACCTGGCAAACCGGTTCCTTATCATGCTGACAATGTGCAAGGAAAACTTCATGTCACTCAGGCTACTTTAGGCAATGGTTCATCAACAGAGAAAAGCATTCTTCAGTGCTCTTCTGGACACAAAAGTTCAGTTTATTTGTGTACGTTGCTGCCAAATAAGGTTGAGTCGTGCCCTCTGAATCTTGAGTTTGATGATGAGGACTTGGTAGCATTCTCAGTCATTGGTTCACGGAGCATCCATCTTTCTGGTTATTTTGTGGCAGATGATGGAGACGACTTGAGGGATGACTATGAGTATGATTCAATGGGAGAGGACGTGGGAACTGATTCAGAGGAGTCATCTGAATATGATAGTGAAAATGGATATGATGAACACTTTTTTGACGATAGTGATATGGACACCTACACAGCTTCACCAGTCCCAAATAGTGGAGTTGTGATTGAGGAAATACACGATGACAATGAGCCTGAAAAGGAAGATAATCCAGCAAAACAATCAAAGAAAAAGGAACAACCGGCATTCTTGAAAGAGAAACCCAGCAAAAAAGAAAGTCAGCCAGATCTTGTTCTGGAAAGTGAAGATGAAGATGGTTTCCCAATTTCCACTTCAAAGCAAGCTAAATCTGAGTCTCAGAAAACAGAACCAGTGGCAAAAGAACAACCGGACAAAAAAACTGGGAAGTCCAATAAGAAGGTAAAAGAGGCTGAACAGTCTGCTAGCTTAAAGCGAAAAGGTGGAAGTGCTGATGAGGATGAGCAGCTGCAAGATGGGAAAAAGAAGAAGAATAAGTCGAAAGATGAGGAAATTGCTCATGTACCTGAGACTAATGTTACTGTGCTAGACGAAAAGCATTCTGAAGGCGAGGAGATTAAAACTACAAACAATCAGAATGATGTTTCCCATGCAAAGGAGGGCCATGATGGAAAACTATCCAATGACAAAGTTCTTGTTGAGAAGAAAAACAAGAAGAAAAAGAAGAAAAAGAACAAAGATACTGAAGGAGTAGCTACTGGGAATGAAATTGCTACAACAGTTGAAAGTCAGAAGTTGTCTACCTCTGAGGAAAAAGGGAAAGGTCAAATTGAAGCCAAGCCATCTAAAATTAGAACATATGCAAATGGGTTGGTTATAGAGGACATATCTATGGGTAAACCAGATGGCAAAAGAGCCGAACTTGGAAAGAAGGTCAGTGTAAAATATATTGGCAAGCTGAAAAAAGATGGGAAAATATTTGACTCGTGTGTCGGAAAAGCACCTTTTAAATTTCACCTTGGTGTAGGAAGCGTCATCAAGGGGTGGGATGTTGGAGTCAATGGGATGAGGGTTGGGGACAAGAGAAGAATTACCATTCCACCATCTATGGGATACGGAGACAAACGTGTTGGGGCTATACCACAAAATTCATGGCTTGTATTTGATGTTGAGTTGGTTGGTGTTGGCAACTAA 1473 0.4107 MGFWGIEVKPGKPVPYHADNVQGKLHVTQATLGNGSSTEKSILQCSSGHKSSVYLCTLLPNKVESCPLNLEFDDEDLVAFSVIGSRSIHLSGYFVADDGDDLRDDYEYDSMGEDVGTDSEESSEYDSENGYDEHFFDDSDMDTYTASPVPNSGVVIEEIHDDNEPEKEDNPAKQSKKKEQPAFLKEKPSKKESQPDLVLESEDEDGFPISTSKQAKSESQKTEPVAKEQPDKKTGKSNKKVKEAEQSASLKRKGGSADEDEQLQDGKKKKNKSKDEEIAHVPETNVTVLDEKHSEGEEIKTTNNQNDVSHAKEGHDGKLSNDKVLVEKKNKKKKKKKNKDTEGVATGNEIATTVESQKLSTSEEKGKGQIEAKPSKIRTYANGLVIEDISMGKPDGKRAELGKKVSVKYIGKLKKDGKIFDSCVGKAPFKFHLGVGSVIKGWDVGVNGMRVGDKRRITIPPSMGYGDKRVGAIPQNSWLVFDVELVGVGN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08076 490 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 402 489 IPR001179 GO:0003755
Vifa1g08076 490 MobiDBLite consensus disorder prediction 104 127 - -
Vifa1g08076 490 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 397 486 IPR001179 GO:0003755
Vifa1g08076 490 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vifa1g08076 490 MobiDBLite consensus disorder prediction 157 197 - -
Vifa1g08076 490 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 488 - -
Vifa1g08076 490 FunFam Peptidyl-prolyl cis-trans isomerase 376 490 - -
Vifa1g08076 490 Gene3D - 360 487 IPR046357 GO:0003755
Vifa1g08076 490 MobiDBLite consensus disorder prediction 104 370 - -
Vifa1g08076 490 SUPERFAMILY FKBP-like 366 488 - -
Vifa1g08076 490 PIRSF FK506-bp_FPR3 49 271 IPR023566 GO:0003755
Vifa1g08076 490 PIRSF FK506-bp_FPR3 1 54 IPR023566 GO:0003755
Vifa1g08076 490 PIRSF FK506-bp_FPR3 246 489 IPR023566 GO:0003755
Vifa1g08076 490 MobiDBLite consensus disorder prediction 220 300 - -
Vifa1g08076 490 MobiDBLite consensus disorder prediction 345 359 - -
Vifa1g08076 490 Gene3D Nucleoplasmin core domain 1 100 - -
Vifa1g08076 490 MobiDBLite consensus disorder prediction 309 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08076 Vifa-Chr1 1262147806 1262151743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08076 402 487 Calmodulin-binding Proteins AT5G48570 47.727 4.08e-15 75.9