Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08074 ATGATAAAAACTTATTTTTATTTAAACGAATTGATTGTGTTTTGCAATCAGATAATTTCAGGTGTGGAATATTGTCACAAGAATATGGTAGCTCATAGAGACTTAAAGTGTGAGAATATATTTTTGGACTCAAAATTCAATATTAAGATTGGTGATTTTGGCCTGAGCAATACCATGCAATACGAACAATTACTTAAGACAAGGTGTGGAAGTACTATCTATGCAGCTCCAGAGGTTATCTCTGGAAAATTATATGATGGATCCAAAGTAGATATTTGGAGTTGTGGTGTAATTTTATATGCTCTTCTTTGTGGTTCTCTCCCTTTTGATGATGAAAATATTCCCAAACTTTACAAAAATATAAAGGGTGGAATATACATTATTCCTAGCTATTTATCAGATGGTGCTAGTGATTTGATATCAAGGCTTCTTGAGGTGGATCCTATGAAGAGAATAAGCATACATGAAATACACCAACACCATTGGTTCAAAATTTCTTTGCCACATTCTTTGGAAGTGTCACCACCAGATACCGTCTAA 540 0.3352 MIKTYFYLNELIVFCNQIISGVEYCHKNMVAHRDLKCENIFLDSKFNIKIGDFGLSNTMQYEQLLKTRCGSTIYAAPEVISGKLYDGSKVDIWSCGVILYALLCGSLPFDDENIPKLYKNIKGGIYIIPSYLSDGASDLISRLLEVDPMKRISIHEIHQHHWFKISLPHSLEVSPPDTV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08074 179 SUPERFAMILY Protein kinase-like (PK-like) 6 165 IPR011009 -
Vifa1g08074 179 Pfam Protein kinase domain 9 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08074 179 SMART serkin_6 1 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08074 179 PANTHER SERINE/THREONINE KINASE 13 174 - -
Vifa1g08074 179 ProSiteProfiles Protein kinase domain profile. 1 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08074 179 ProSitePatterns Serine/Threonine protein kinases active-site signature. 30 42 IPR008271 GO:0004672|GO:0006468
Vifa1g08074 179 Gene3D Transferase(Phosphotransferase) domain 1 3 177 - -
Vifa1g08074 179 FunFam Maternal embryonic leucine zipper kinase 4 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08074 Vifa-Chr1 1261818113 1261819063 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08074 16 165 CBL-interacting serine-threonine protein kinases AT3G17510 50.980 4.79e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vifa1g08074 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08074 K07198 - gmx:547544 250.366