Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08073 ATGGCAAGGAAGAGAAAGGTTTCTGAAGTAGTTGAAGAAGGAAGCATGGTTTGGGATGAAATGATGAAAGAAGCAGCATCACTAGGAGGAGGTAGACGAGTCCGAAAGCGATTCGTCGGTGTTCGACAAAGGCCTTCGGGTAGATGGGTTGCTGAGATTAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGACACTGCTGAAGAAGCTGCAAGAGCTTATGATGAGGCTGCATGCTTGCTTCGCGGTGCGAATACTCGCACCAATTTCTGGCCTTGTTCTCAATCTTCAACTACTCCTGCTCTTTCTTCAAAGATCACTAATCTCTTACTCCAAAGACTTAAAGAAAGGAACATGAACATGAACATGAACATGAACATGAATAACTCTTGTTCTTTGCCGAAATACACTTCCTTGTTGGGGAGTTCTGAGGAGAGTCGGGAGCACCAACGAGTCAACGAGACGGATATACAACAAGTGGAGGAGGCCTATGGAGAAGGATCAAAACATTTCACAATTGATCAATTCACCGATTTTCTCAACGATCACGAAGATTATAGCGCAAGCAACCACGAATTCATCGATAACACTGCTCAATTAGACTACATTTCGAGTAGTTTCGAATCATGTTTAACCGAAAACAATATCTGCAAAGGAAACGAGAACATCAATATCGATATCGAATACAACTCGAAATCAAACAATGTGACACAAACTTCAAGTGGTGATAGCAATTCAGAAGATAGTGAAGAAGAAGGTATTGTTGATGTGCCCGATTTTCGGTTTCTAGACGATATTGCACCAACTAGTTACTACTCACCTTTTGAGATTGCTGAAGAAATGGAAGAGAAAATGGAGACAGAAGATTTTAGTGATGAGCCATCAATGATAAGAGCTGTGATGAAGAGAATGAAATATGAGAGAAAATTTTCAGCTTCTCTTTATGCATTCAATGGAATACCGGAATGCTTGAAGTTGAAACTTGAATCAGGAAACAATAATAATGGAAGAGGATTCATTTCTGAACAATTGAACAACCTTAAGGAATCATGTAGCAAGAACAAGGTTGAGGTGGATGATGACAAAAATGAACAAGTTTCAATGGAGATTCAACAATCTTGTTCATTGTCTAGGAATGATAGTGATCTTGTCCTTTGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTAACTTACTTGAAAATGGTTCATTTAATTAG 1230 0.3886 MARKRKVSEVVEEGSMVWDEMMKEAASLGGGRRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTTPALSSKITNLLLQRLKERNMNMNMNMNMNNSCSLPKYTSLLGSSEESREHQRVNETDIQQVEEAYGEGSKHFTIDQFTDFLNDHEDYSASNHEFIDNTAQLDYISSSFESCLTENNICKGNENINIDIEYNSKSNNVTQTSSGDSNSEDSEEEGIVDVPDFRFLDDIAPTSYYSPFEIAEEMEEKMETEDFSDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNNNNGRGFISEQLNNLKESCSKNKVEVDDDKNEQVSMEIQQSCSLSRNDSDLVLWNSLDLPPICFVNLLENGSFN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08073 409 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Vifa1g08073 409 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Vifa1g08073 409 MobiDBLite consensus disorder prediction 236 255 - -
Vifa1g08073 409 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Vifa1g08073 409 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vifa1g08073 409 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Vifa1g08073 409 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Vifa1g08073 409 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Vifa1g08073 409 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 314 - -
Vifa1g08073 409 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vifa1g08073 409 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08073 Vifa-Chr1 1261812223 1261813452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08073 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.74e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g08073 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08073 K09286 - gmx:100790398 486.493