Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08068 ATGAATTGGAGTAATTCAACAAGTGATGGTAATAGCAACAAGAAGTTTAAGGGAGTTAGACAAAGAAAATGGGGGAAATACGTGTCGGAGATTCGTGTTCCGGGGACTCAAGAACGTTTATGGTTGGGAACTTATGCTACACCGGAAGCTGCTGCGGTTGCACATGATGTCGCTGTTTATTGTTTGAAGAGACCTTCTACGTTGGACAAACTCAACTTTCCTCAGATTTTGTTTTTTTATTGTATCCAACAGAGAGATGGTTTGATGTCTCCGAGGTCTGTTTTGAAGGTTGCTTCTGATGTTGCTATGGATGTTGATGCTAGAAACATTGCAAACCAAACGACAACAACAGCAAGAGCAACAACTTTGGATCAATCTCATCATGTCCACAATGTTGTTGCTGATGATGATGTGTGTTGGTGGGAAGGTTTGGGTGGTGATGATCAAGGAATGACACAAGTTTCTAACGAACGAGAAGGATTGAGCATTTCCATTGAAGATTATCTATAG 510 0.4098 MNWSNSTSDGNSNKKFKGVRQRKWGKYVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKRPSTLDKLNFPQILFFYCIQQRDGLMSPRSVLKVASDVAMDVDARNIANQTTTTARATTLDQSHHVHNVVADDDVCWWEGLGGDDQGMTQVSNEREGLSISIEDYL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08068 169 Gene3D AP2/ERF domain 14 76 IPR036955 GO:0003700|GO:0006355
Vifa1g08068 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 121 - -
Vifa1g08068 169 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Vifa1g08068 169 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Vifa1g08068 169 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Vifa1g08068 169 CDD AP2 14 49 IPR001471 GO:0003700|GO:0006355
Vifa1g08068 169 ProSiteProfiles AP2/ERF domain profile. 15 74 IPR001471 GO:0003700|GO:0006355
Vifa1g08068 169 SMART rav1_2 15 80 IPR001471 GO:0003700|GO:0006355
Vifa1g08068 169 Pfam AP2 domain 15 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08068 Vifa-Chr1 1261007516 1261008025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08068 1 149 AP2-EREBP Transcription Factor Family AT1G22810 41.611 1.10e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g08068 AP2 6.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08068 - - mtr:11437172 238.424