Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08067 ATGGTCCACCCTATCCTCCACCATGTCTTGCCTAAAACCCCTTTGACTCTCAAAATCTTCAACCTATATAAACACTTACCACTTCACCATTTTCTGACACAATCCACTTCTTTGCCACCACTCACACTAGCTATAAACAATATACATAAAGTTTTTCTTTCTTCAAAGATGAATTGGAGTAATTCAACAAGTGATGGTAATAGCAACAAGAAGTTTAAGGGAGTTAGACAAAGAAAATGGGGGAAATACGTATCGGAGATTCGTGTTCCGGGGACTCAAGAACGTTTATGGTTGGGAACTTATGCTACACCGGAAGCTGCTGCGGTTGCACATGATGTCGCTGTTTATTGTTTGAAGAGACCTTCTACGTTGGACAAACTCAACTTTCCTCAGATTTTGTCTTCTTATTGTATCCAACAGAGAGATGGTTTGATGTCTCCTAGGTCTGTTCAAAAGGTTGCTTCTGATGTTGCTATGGATGTTGATGCTAGAAACATTGCAAACCAAACGACAACAACTTTGGATCAATCTCATCATGCCCACAATGTTGTTGCTGATGATGATGTGTGTTGGTGGGAAGGTTTGGGTGGTGATGATCAAGGAATGACACAAGTTTCTAACCAACAAGAAGGATTGAGCATTTCCATTGAAGATTATCTATAA 663 0.3997 MVHPILHHVLPKTPLTLKIFNLYKHLPLHHFLTQSTSLPPLTLAINNIHKVFLSSKMNWSNSTSDGNSNKKFKGVRQRKWGKYVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKRPSTLDKLNFPQILSSYCIQQRDGLMSPRSVQKVASDVAMDVDARNIANQTTTTLDQSHHAHNVVADDDVCWWEGLGGDDQGMTQVSNQQEGLSISIEDYL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08067 220 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vifa1g08067 220 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Vifa1g08067 220 Pfam AP2 domain 71 119 IPR001471 GO:0003700|GO:0006355
Vifa1g08067 220 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Vifa1g08067 220 CDD AP2 70 105 IPR001471 GO:0003700|GO:0006355
Vifa1g08067 220 ProSiteProfiles AP2/ERF domain profile. 71 130 IPR001471 GO:0003700|GO:0006355
Vifa1g08067 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 61 178 - -
Vifa1g08067 220 SMART rav1_2 71 136 IPR001471 GO:0003700|GO:0006355
Vifa1g08067 220 Gene3D AP2/ERF domain 70 132 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08067 Vifa-Chr1 1260996765 1260997427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08067 57 220 AP2-EREBP Transcription Factor Family AT1G22810 43.902 4.32e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g08067 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08067 - - mtr:11437172 252.292