Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08063 ATGGGGTGCATTTGCTCAAAATATTCGTCAAGCAGAGAAAGAGTTGAAGAATGTGGAAAAGAAAGTGAATGGAATAAATCTTCAGTGCAATTAGTTGCTCCTACACAAATAAATGGGGTTGGAATAGCCATTACAATGGATGGTGGTAATATTATGCCACATTTGTCAAAGGCGTCATCGCAAGTGTTTCAAAGAGTAGAAGAGAAAAGCAATCAGTCAGATGATAGCAACAAAAGCCAACATCAAAGAAGTAAGACAATAAGTTCTGGTGTTGGTGAAAGAAAGCCAATAATGAGTAGAATACTCAGTGTGCAAAATTTTTCAGGAGAACAATATGTTGATTCTGGATGGCCAATATGGTTGTCCTCAGTTGCAGCTGAGGCTATCAAAGGTTGGGTTCCTAGAAGGGCTGACACTTTTGAAAAATTAGACCAAATTGGGCAAGGGGCTTATAGTAGTGTGCATAAAGCTATTGATCGTGAAACTGGTAAATATGTTGCGTTAAAGAAAGTTAGGTTTTCAAGTGGAGATGTTGAAAGTGTTCGTTTTATGGCAAGGGAAATATATATTATGCGTCAACTTGATCATCCTAATATCCTCAAACTTGAAGGTATTGTCACATCTAGAACTTCAACTAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGATTAGCAGCTAGACCTGGTATCAAGTTTACTGAACCACAGATAAAATGCTACATGAAGCAACTACTAAGTGGGCTAGAACATTGTCATAGCAAGGGTGTGTTGCACCGTGACATCAAGGGTTCTAATCTTCTACTTGACAATAATGGAAATCTTAAAATTGGAGATTTTGGTCTAGCAACAGTTTATGAACCTAATAGCAAAGTTCCATTGACAAGTCGTGTTGTAACTCTTTGGTATAGAGCCCCTGAGCTTTTACTAGGTGCTACAGACTATGGTGTGGGAATCGACATGTGGAGCGTCGGTTGCATTCTTGCAGAATTGTTTGTGGGCAAGCCTATCATGCCTGGAAGAACGGAGGTGGAACAAATGCACAAAATTTTTAAGCTTTGTGGTTCGCCATCTGAAGAATATTGGCAAAGAACAAAACTTCCATATGCAACAAGTTTTAAACCGCAAAACTCTTACCAACGACAAATCGCAAAAACATTTAACAATTTTCCTTCCACTGGATTGGCCCTTGTAGATAGACTTCTCTCAATGGAACCAGAACACCGAGGATCTGCAACTTCCGCACTTAAGAGTGAGTTCTTCATTACAAATCCTCTACCTTGTGATCCTTCAAGCTTACCAAAGCTTCCGCCAAGCAAAGAGTTTGATGCCAAGCGCCGTGATAAAGAATCAATAAGAAAAAATAATGAAGCTATTAAAGAACGTGGACCGGGAAGTGTTTTAAGAGGAACAGGAAATACCAAAGCATTGAAAACACCAGACTATAATGGTCGGGGAGATATATCATTCCAGAGCAAATCAAATACTAAAATGTCTGGTATTAAATATGAATCCCAAGAAGACGACGAATCTAATAACAAGTGTGAACCAAGTAGAGCATCCATGCATAATGGATATACAACATTTACGCACAGTACAACAGGACCATCGTCGTTATCGAATAAGAGACAAGAACCATATAAGAAATATATTTCGGATTTAAGAACACAAAGGTCAAATGTGAATCAAGCAGCAATAGATTTCTCTATTTCTATTAAAAAGGAACAAGGCATGTCAGGTCGAGAATCAGGAATGCCTAAGAAAAATAGAATCCATTGTTCTGGACCATTGATGGCTACAGGGGGAAACATTGATGACATGCTTAGAGAACATGAGAGGTTAATGCAAGATGTTTTTCGTAGTGTTAAGAAAGCTAATCCGTAA 1893 0.3856 MGCICSKYSSSRERVEECGKESEWNKSSVQLVAPTQINGVGIAITMDGGNIMPHLSKASSQVFQRVEEKSNQSDDSNKSQHQRSKTISSGVGERKPIMSRILSVQNFSGEQYVDSGWPIWLSSVAAEAIKGWVPRRADTFEKLDQIGQGAYSSVHKAIDRETGKYVALKKVRFSSGDVESVRFMAREIYIMRQLDHPNILKLEGIVTSRTSTSLYLVFEYMEHDLAGLAARPGIKFTEPQIKCYMKQLLSGLEHCHSKGVLHRDIKGSNLLLDNNGNLKIGDFGLATVYEPNSKVPLTSRVVTLWYRAPELLLGATDYGVGIDMWSVGCILAELFVGKPIMPGRTEVEQMHKIFKLCGSPSEEYWQRTKLPYATSFKPQNSYQRQIAKTFNNFPSTGLALVDRLLSMEPEHRGSATSALKSEFFITNPLPCDPSSLPKLPPSKEFDAKRRDKESIRKNNEAIKERGPGSVLRGTGNTKALKTPDYNGRGDISFQSKSNTKMSGIKYESQEDDESNNKCEPSRASMHNGYTTFTHSTTGPSSLSNKRQEPYKKYISDLRTQRSNVNQAAIDFSISIKKEQGMSGRESGMPKKNRIHCSGPLMATGGNIDDMLREHERLMQDVFRSVKKANP 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08063 630 Gene3D Transferase(Phosphotransferase) domain 1 228 464 - -
Vifa1g08063 630 Coils Coil 445 465 - -
Vifa1g08063 630 SUPERFAMILY Protein kinase-like (PK-like) 133 432 IPR011009 -
Vifa1g08063 630 PANTHER CELL DIVISION PROTEIN KINASE 138 430 - -
Vifa1g08063 630 MobiDBLite consensus disorder prediction 66 90 - -
Vifa1g08063 630 MobiDBLite consensus disorder prediction 431 525 - -
Vifa1g08063 630 MobiDBLite consensus disorder prediction 579 598 - -
Vifa1g08063 630 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08063 630 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08063 630 MobiDBLite consensus disorder prediction 505 519 - -
Vifa1g08063 630 MobiDBLite consensus disorder prediction 442 463 - -
Vifa1g08063 630 FunFam probable serine/threonine-protein kinase At1g54610 127 222 - -
Vifa1g08063 630 Gene3D Phosphorylase Kinase; domain 1 135 227 - -
Vifa1g08063 630 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Vifa1g08063 630 FunFam probable serine/threonine-protein kinase At1g54610 223 464 - -
Vifa1g08063 630 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08063 630 CDD STKc_CDK9_like 140 424 - -
Vifa1g08063 630 MobiDBLite consensus disorder prediction 488 504 - -
Vifa1g08063 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08063 Vifa-Chr1 1260447110 1260449579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08063 132 465 Core Cell Cycle Gene Families AT5G10270 51.143 1.40e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa1g08063 Pkinase 3.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08063 K08819 - gmx:100791743 831.247