Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08061 ATGGAGCCATCAGTTCACATCGACGAAGCCTTTCTAGGAGGACCTTCAAACAGAGTTGGAATTTGGAACCCTAGGAGTTTACTTACTCTCATTCTTCCATCACCAGCCATTGAAGGATGGATTATTTTGGTGACCGGTGTGCACGAGGAAGCTCAAGATGATGATTTGCATAATGTGTTTGGTGAATATGGAGAGATTAAGAACCTTAACTTGAATCTTGATCGCCGCACTGGTTTTGTCAAGGGTTATGCACTGATTGAATACGAGGGTGCTGAGGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATTAATGAGTCCGTTAAAAGAAAGAATGCCAGACCACCTCAGCGGCGCTCAAGGAGTCCTCCTCGGAGGAGATATTGA 441 0.4399 MEPSVHIDEAFLGGPSNRVGIWNPRSLLTLILPSPAIEGWIILVTGVHEEAQDDDLHNVFGEYGEIKNLNLNLDRRTGFVKGYALIEYEGAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVKRKNARPPQRRSRSPPRRRY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08061 146 Gene3D - 24 132 IPR012677 -
Vifa1g08061 146 MobiDBLite consensus disorder prediction 132 146 - -
Vifa1g08061 146 FunFam RNA-binding protein 8A 30 131 - -
Vifa1g08061 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 111 IPR000504 GO:0003723
Vifa1g08061 146 CDD RRM_RBM8 37 121 IPR033744 GO:0003729
Vifa1g08061 146 PRINTS RNA binding motif protein 8 family signature 87 103 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vifa1g08061 146 PRINTS RNA binding motif protein 8 family signature 105 117 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vifa1g08061 146 PRINTS RNA binding motif protein 8 family signature 31 45 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vifa1g08061 146 SUPERFAMILY RNA-binding domain, RBD 33 144 IPR035979 GO:0003676
Vifa1g08061 146 MobiDBLite consensus disorder prediction 124 146 - -
Vifa1g08061 146 PANTHER RNA-BINDING PROTEIN 8A 33 145 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vifa1g08061 146 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vifa1g08061 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08061 Vifa-Chr1 1260214711 1260224479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08061 42 113 Eukaryotic Initiation Factors Gene Family AT4G34110 37.500 1.38e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08061 K12876 - gmx:100527187 185.267