Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08054 ATGGCACCTTTTGTATTAACAGTGTCACAAGATGGAGTTGGAAACTACAGAACGGTACAAGAAGCCATTGATGCAGTTCCACTCGGCAACACACGCCGAACGGTGATAAGGATATCGCCGGGAATCTACCGGCAGCCACTATATGTTCCAAAAACCAAGAAGTTCATCACTTTCGTAGGTTTGTTTCCTGAGGATACTGTTCTGACATGGAACAACACTGCCAATAAAATTGATCACCACCAAGGTTCTAAGGTGATAGGAACTGGAACATTTGGTTGTGGAAGTAGCATTGTGGAAGGGGAAGATTTTATTGCTGAGAATATTACTTTTGAGAATTCTTCTCCTGAGGGTTCAGGGCAAGCAGTGGCAGTTAGAGTAACAGCAGATCGATGTGCATTCTATAATTGTAGGTTCCTTGGATGGCAGGACACATTGTATTTACATTATGGCAAACTTTATCTGAGAGATTGTTATATTGAAGGAAGTGTGGACTTTATTTTTGGTAATAGCACTGCACTCTTAGAGCATTGTCATATCCATTGCAAGTCTTCGGGGTTCATAACTGCGCAAAGCAGGAAATCTCCACATGAAAAAACTGGTTTTGTATTCCTGAGATGTGTTATCACGGGCAATGGAGGAAGCTCATATGCATATCTTGGAAGGCCATGGGGACCTTATGGAAGAGTGGTATTTGCATTTACTTATATGGATCAATGTATAAGATCTGTTGGCTGGAATAATTGGGGAAATGTTGAAAACGAAACAAGTGCTTGCTTCTATGAATACAGGTGTTTTGGACTGGGTTTTGTTCCTTCAAAAAGGGTGAAATGGGCTAGAATGTTAAAGGATAAAGAAGTTGAACAATTTCTCATGCATAGCTTCATTGATCCAGAACCACAAAAGCCTTGGCTAGCTCAAAGAATGGCCTTAAGGATTCCATATTCTGCTTAG 951 0.409 MAPFVLTVSQDGVGNYRTVQEAIDAVPLGNTRRTVIRISPGIYRQPLYVPKTKKFITFVGLFPEDTVLTWNNTANKIDHHQGSKVIGTGTFGCGSSIVEGEDFIAENITFENSSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKLYLRDCYIEGSVDFIFGNSTALLEHCHIHCKSSGFITAQSRKSPHEKTGFVFLRCVITGNGGSSYAYLGRPWGPYGRVVFAFTYMDQCIRSVGWNNWGNVENETSACFYEYRCFGLGFVPSKRVKWARMLKDKEVEQFLMHSFIDPEPQKPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08054 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Vifa1g08054 316 FunFam Pectinesterase 2 309 - -
Vifa1g08054 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Vifa1g08054 316 Gene3D - 4 310 IPR012334 -
Vifa1g08054 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Vifa1g08054 316 SUPERFAMILY Pectin lyase-like 3 300 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08054 Vifa-Chr1 1259557681 1259562646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08054 5 309 Carbohydrate Esterase AT5G47500 37.700 6.70e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08054 K01051 - rcu:8283426 571.237