Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08046 ATGGGACGTTCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCATATATCGAAGAACACGGCCATGGAAGTTGGCGCGCTTTGCCAGCTAAAGCTGGTCTTCAAAGATGTGGGAAGAGCTGCAGATTAAGATGGACCAATTATCTTAGACCTGATATTAAGAGAGGAAAATTTAGTTTGCAAGAAGAACAAACAATTATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCTACACATTTGTCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTGAAAAAAAGGTTAACAAAAATGGGAATTGATCCAGTTACTCACAAACCTAAAAATGATGCACTTCTTTCATCAAGTGATAATGTTCATTCAAAAACAGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCCAAAATTCGTTCACACAATTCACTTCTTCATAATAATCATAATCATAATCATTTGAAGGCTTGGAATATTAATCTGGAATCTCCTACTTCAACTTTATCTTATAATGAGAATGTTCCTCCTATTATTATGAGTAGTGAAGGAATTGGAGGAGAGAAAAACAACAATGATAATGAGAAAAATAATAATAATAATAATGATGTTAATGATGATGAGAACAATGTTGTTGTGTCTATGATTGAGTTTGTAGGAACAAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGAAAATTGGAAAACTTATGAAAGTTTTACATCAAACCTTCATCATGAGTTAACTATGTCAATGGATCAAGGTGTTGGTGATGTTATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAAACAAATTCTGAGGATTTGAGTTTGTCAGAAAGTGGTGGAGAATCTAACAATGGTGGAAGTGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTATTGGAATAGTATTCTTAATTTAGTTAATTCTTCTCCTTCTCATTCACCAATGTTTTGA 1077 0.3417 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDNVHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNSLLHNNHNHNHLKAWNINLESPTSTLSYNENVPPIIMSSEGIGGEKNNNDNEKNNNNNNDVNDDENNVVVSMIEFVGTNSSSIVKEEGGDDQENWKTYESFTSNLHHELTMSMDQGVGDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGSGSGSEFYEDNNNYWNSILNLVNSSPSHSPMF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08046 358 MobiDBLite consensus disorder prediction 217 240 - -
Vifa1g08046 358 CDD SANT 69 112 IPR001005 -
Vifa1g08046 358 SMART sant 66 114 IPR001005 -
Vifa1g08046 358 SMART sant 13 63 IPR001005 -
Vifa1g08046 358 CDD SANT 16 61 IPR001005 -
Vifa1g08046 358 MobiDBLite consensus disorder prediction 312 331 - -
Vifa1g08046 358 FunFam MYB-related transcription factor 13 66 - -
Vifa1g08046 358 Gene3D - 68 145 - -
Vifa1g08046 358 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa1g08046 358 MobiDBLite consensus disorder prediction 212 240 - -
Vifa1g08046 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa1g08046 358 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa1g08046 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Vifa1g08046 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa1g08046 358 FunFam MYB transcription factor 69 116 - -
Vifa1g08046 358 Gene3D - 13 66 - -
Vifa1g08046 358 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa1g08046 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa1g08046 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08046 Vifa-Chr1 1257212938 1257214795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08046 1 358 MYB Transcription Factor Family AT3G01140 55.381 2.39e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g08046 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08046 K09422 - gmx:100101835 450.284