Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08045 ATGCCTGTGCTCTCTCCCTCTATGTGGCGCTCTTTCTCTTGCCAACCACCATCTGTTCCGAATTCTTCCATTGTATCTCTTCAGCCCAGCATTAAAAATTTGTTGTTCTGGTTGTTCTTTTGGCATAAACAGAAGGCACCTAACCAATTTAATATGGAACTTTGTTGTTCTGGTTGTTCTTTTGGCATAAACATAGCCAAAATTCAATGGACAAACATGAGGAGTACTTCTGCACCAGTGAACATTATTGTTGGTTCTCATGTCTGGGTTGAAGATCCAACACTAGCATGGATTGGTGGTGAAGTTACTAAAATCAGTGGTGAGAACGTCCATGTTCGCACCAGAGATGGGAAAACTGATTTGATCGAGAGTTTTGGATTCTTTGCAGAATTACTTAGACTGCATGCAACTGCCAGACTCTATCCGGTGGCGTATTCAAGCTGCAATGCCTGTGCTCTCTCCCTCTCTGATGGCGCTGGATCTTTCCCTTCTGCAAGCAATATTGGAGGTAGCGACTGTGTTAATATTCGTGCTTCCAGCTTGCTTAAAGGGGCTGTAAGGGTGAGAAGGACTGACCTTACCTATGTCGGTGTTGTGGCTGAGGATAGTTGA 612 0.4428 MPVLSPSMWRSFSCQPPSVPNSSIVSLQPSIKNLLFWLFFWHKQKAPNQFNMELCCSGCSFGINIAKIQWTNMRSTSAPVNIIVGSHVWVEDPTLAWIGGEVTKISGENVHVRTRDGKTDLIESFGFFAELLRLHATARLYPVAYSSCNACALSLSDGAGSFPSASNIGGSDCVNIRASSLLKGAVRVRRTDLTYVGVVAEDS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08045 203 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 83 132 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa1g08045 203 Pfam Myosin N-terminal SH3-like domain 84 119 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa1g08045 203 SUPERFAMILY Myosin S1 fragment, N-terminal domain 87 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08045 Vifa-Chr1 1257071034 1257073113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08045 77 119 Myosins gene family AT1G17580 76.744 4.53e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08045 K10357 - gmx:100777802 78.1814