Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08039 ATGGAACAGAAAGGTTTGTTGTTATCAGCGCTTAGCGTTGGTGTTGGAGTTGGAGTCGGCCTTGGTTTGGCTTCTGGACAAACCAAATGGGGAGCTAATACTTCTGCCTCCAACGCCATCACGCCGGAGAAAATCGAACACGAAATGCTTCGACTTGTTGTTGATGGAAGAGAAAGCAATGTCACTTTTGACAATTTCCCTTATTATCTCAGTGAGAAGACAAGGGTGTTGCTGACAAGTGCTGCCTATGTCCATTTAAAGCATGCAGAGGTTTCTAAATATACACGGAATCTCGCACCTGCAAGCCGGACTATTCTGCTCTCAGGGCCAGCCGAGCTTTACCAACAGGTGCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCCAAGTTGCTTCTGTTCGATGTAACTGACTTTTCTTTGAAGATTCAAAGTAGATATGGCTCTTCCAACAACGAAATTTCTTTCAAAAGATCTACTTCGGACACAACTTTAGCTCGGTTATCTGACCTATTTGGTTCGTTTTCAATCTTTCCACCGAGAGAAGAGACTAGAGGTAGAATGAAAAAGCAACACAGTGGCGTAGACCTTAAACGAATGGAGGCGGAAGGAACTTATACTCCTAATAAACTTCGTAGGAATGCATCAGCCTCTGCAAATATTAGCAGCCTTGGTTCGCAAAGCAATTCTACAAGCTCAGCTCCCGGGAAGCACATGGCCAACTGGTCTTTTGATGAAAAGCTTCTTATACAGACTCTTTACAAGGCTCTAGTTTATGTGTCAAAAACCTATCCCATTGTTCTATATCTGCGGGATGTTGATAAGCTGTTGTGTAGATCACAGAGGATATGTAAACTATTCCAGACAATGTTAACGAAATTATCCGGACCGATTTTGATTCTTGGTTCAAGGGTTTTGGATTCTGGTAATGAATGCGAAGAAGTGGATGAGATGCTTAGCCCCCTCTTCCCTTACAACATAGAAATCAGCCCACCAGAAGATGAGTCTCGTCTTGTCAGCTGGAAGTCTCAATTTGAAGCAGATATGAAGAGGATACAGATTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTCATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTGTTGTGTCAGCAATTTCCTATCATTTAATGAATAACAAAGAGCCTGAATACAGAAATGGGAAACTGGTTATTCCATGCAATAGCTTGTCCCATGCTCTGGGTATATTCCACGAGGGAAAACTCAGTGGAAGAGATACATTAAAACTAGAAGCTCAAGCAGTTACATCTGAGAGAGAGGAAGGAGCTGTTGTGAAACCAGAAGAAAAGTCTGAAAATCCTGCTCCTGGTATAAAGACTGAAAATCCTGCTCCTGGTGTAAAGACCGAAACAGAAATACTAACTTCGGTGGGCAAAACTGATGGTGAAAATTCCGTTCCTGCAACCAAAGCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAAGTAATACCAGCAAATGAAATTGGGGTAACATTCTCCGATATTGGTGCCTTAGAAGAGACTAAAGAGTCACTTCAAGAACTAGTAATGCTTCCCCTTCGAAGGCCAGACCTTTTTGATGGGGGCCTTTTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCGCCTGGAACAGGAAAAACAATGCTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTAGCAGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTGGATAGTATGCTTGGGCAGCGGACAAGAGTCGGGGAACATGAAGCCATGCGGAAAATAAAGAATGAATTTATGACCAATTGGGATGGACTTACCTCAAAACCGTCGGATCGCATCCTTGTCCTGGCTGCAACCAATAGGCCCTTTGACTTGGATGAGGCAATTATTAGACGATTTGAAAGGAGGATTATGGTTGCATTACCATCTGTGGCGAACAGGGAAAATATATTGAGGACCCTTTTGGCTAAAGAGAAGGTGGACAATAGACTTGATTTTAAGGAAATCGCAACTATGACAGAAGGATACAGCGGAAGCGATCTAAAGAACTTATGCACAACCGCTGCTTATAGACCTGTTAGAGAGTTAATTCAGCAAGAGTTAAAAAAGGATTCGGAGAAAAAGAAGAAAGATGCCGAAGGAAAAAATAGCCAAGATGTTCATGATGCAGAGGAGGAAGTTAAACAGGAAAGAGTTATTACCCTTAGGCCTTTGAATATGGAGGACTTCAAAGTGGCAAAGAATCAGGTTGCCGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAATGACTTGAAGCAGTGGAATGACCTTTATGGGGAAGGTGGTTCAAGGAAGAAAGAACAATTATCTTATTTCCTATGA 2529 0.4255 MEQKGLLLSALSVGVGVGVGLGLASGQTKWGANTSASNAITPEKIEHEMLRLVVDGRESNVTFDNFPYYLSEKTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLFDVTDFSLKIQSRYGSSNNEISFKRSTSDTTLARLSDLFGSFSIFPPREETRGRMKKQHSGVDLKRMEAEGTYTPNKLRRNASASANISSLGSQSNSTSSAPGKHMANWSFDEKLLIQTLYKALVYVSKTYPIVLYLRDVDKLLCRSQRICKLFQTMLTKLSGPILILGSRVLDSGNECEEVDEMLSPLFPYNIEISPPEDESRLVSWKSQFEADMKRIQIQDNKNHIMEVLAANDLDCHDLDSICVADTMVLSNYIEEIVVSAISYHLMNNKEPEYRNGKLVIPCNSLSHALGIFHEGKLSGRDTLKLEAQAVTSEREEGAVVKPEEKSENPAPGIKTENPAPGVKTETEILTSVGKTDGENSVPATKAEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALEETKESLQELVMLPLRRPDLFDGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTNWDGLTSKPSDRILVLAATNRPFDLDEAIIRRFERRIMVALPSVANRENILRTLLAKEKVDNRLDFKEIATMTEGYSGSDLKNLCTTAAYRPVRELIQQELKKDSEKKKKDAEGKNSQDVHDAEEEVKQERVITLRPLNMEDFKVAKNQVAASFAAEGAGMNDLKQWNDLYGEGGSRKKEQLSYFL 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08039 842 Gene3D - 525 785 IPR027417 -
Vifa1g08039 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 764 IPR027417 -
Vifa1g08039 842 Pfam AAA+ lid domain 720 759 IPR041569 -
Vifa1g08039 842 MobiDBLite consensus disorder prediction 758 784 - -
Vifa1g08039 842 ProSitePatterns AAA-protein family signature. 669 688 IPR003960 GO:0005524|GO:0016887
Vifa1g08039 842 SMART AAA_5 562 699 IPR003593 GO:0016887
Vifa1g08039 842 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 525 700 - -
Vifa1g08039 842 Gene3D - 698 781 - -
Vifa1g08039 842 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 841 - -
Vifa1g08039 842 MobiDBLite consensus disorder prediction 450 466 - -
Vifa1g08039 842 Pfam ATPase family associated with various cellular activities (AAA) 566 695 IPR003959 GO:0005524|GO:0016887
Vifa1g08039 842 MobiDBLite consensus disorder prediction 450 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08039 Vifa-Chr1 1255970426 1255976002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08039 526 756 Calmodulin-binding Proteins AT3G56690 37.179 2.33e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08039 - - gmx:100808011 1291.56