Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08038 ATGGAACAGAAAGGTTTGTTGTTATCAGCGCTTAGCGTTGGTGTTGGAGTTGGAGTCGGCCTTGGTTTGGCTTCTGGACAAACCAAATGGGGAGCTAATACTTCTGCCTCCAACGCCATCACGCCGGAGAAAATCGAACACGAAATGCTTCGACTTGTTGTTGATGGAAGAGAAAGCAATGTCACTTTTGACAATTTCCCTTATTATCTCAGTGAGAAGACAAGGGTGTTGCTGACAAGTGCTGCCTATGTCCATTTAAAGCATGCAGAGGTTTCTAAATATACACGGAATCTCGCACCTGCAAGCCGGACTATTCTGCTCTCAGGGCCAGCCGAGCTTTACCAACAGGTGCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCCAAGTTGCTTCTGTTCGATGTAACTGACTTTTCTTTGAAGATTCAAAGTAGATATGGCTCTTCCAACAACGAAATTTCTTTCAAAAGATCTACTTCGGACACAACTTTAGCTCGGTTATCTGACCTATTTGGTTCGTTTTCAATCTTTCCACCGAGAGAAGAGACTAGAGGTAGAATGAAAAAGCAACACAGTGGCGTAGACCTTAAACGAATGGAGGCGGAAGGAACTTATACTCCTAATAAACTTCGTAGGAATGCATCAGCCTCTGCAAATATTAGCAGCCTTGGTTCGCAAAGCAATTCTACAAGCTCAGCTCCCGGGAAGCACATGGCCAACTGGTCTTTTGATGAAAAGCTTCTTATACAGACTCTTTACAAGGCTCTAGTTTATGTGTCAAAAACCTATCCCATTGTTCTATATCTGCGGGATGTTGATAAGCTGTTGTGTAGATCACAGAGGATATGTAAACTATTCCAGACAATGTTAACGAAATTATCCGGACCGATTTTGATTCTTGGTTCAAGGGTTTTGGATTCTGGTAATGAATGCGAAGAAGTGGATGAGATGCTTAGCCCCCTCTTCCCTTACAACATAGAAATCAGCCCACCAGAAGATGAGTCTCGTCTTGTCAGCTGGAAGTCTCAATTTGAAGCAGATATGAAGAGGATACAGATTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTCATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTGTTGTGTCAGCAATTTCCTATCATTTAATGAATAACAAAGAGCCTGAATACAGAAATGGGAAACTGGTTATTCCATGCAATAGCTTGTCCCATGCTCTGGGTATATTCCACGAGGGAAAACTCAGTGGAAGAGATACATTAAAACTAGAAGCTCAAGCAGTTACATCTGAGCAGAGAGAGGAAGGAGCTGTTGTGAAACCAGAAGAAAAGTCTGAAAATCCTGCTCCTGGTATAAAGACTGAAAATCCTGCTCCTGGTGTAAAGACCGAAACAGAAATACTAACTTCGGTGGGCAAAACTGATGGTGAAAATTCCGTTCCTGCAACCAAAGCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAAGTAATACCAGCAAATGAAATTGGGGTAACATTCTCCGATATTGGTGCCTTAGAAGAGACTAAAGAGTCACTTCAAGAACTAGTAATGCTTCCCCTTCGAAGGCCAGACCTTTTTGATGGGGGCCTTTTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCGCCTGGAACAGGAAAAACAATGCTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTAGCAGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTGGATAGTATGCTTGGGCAGCGGACAAGAGTCGGGGAACATGAAGCCATGCGGAAAATAAAGAATGAATTTATGACCAATTGGGATGGACTTACCTCAAAACCGTCGGATCGCATCCTTGTCCTGGCTGCAACCAATAGGCCCTTTGACTTGGATGAGGCAATTATTAGACGATTTGAAAGGAGGATTATGGTTGCATTACCATCTGTGGCGAACAGGGAAAATATATTGAGGACCCTTTTGGCTAAAGAGAAGGTGGACAATAGACTTGATTTTAAGGAAATCGCAACTATGACAGAAGGATACAGCGGAAGCGATCTAAAGAACTTATGCACAACCGCTGCTTATAGACCTGTTAGAGAGTTAATTCAGCAAGAGTTAAAAAAGGATTCGGAGAAAAAGAAGAAAGATGCCGAAGGAAAAAATAGCCAAGATGTTCATGATGCAGAGGAGGAAGTTAAACAGGAAAGAGTTATTACCCTTAGGCCTTTGAATATGGAGGACTTCAAAGTGGCAAAGAATCAGGTTGCCGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAATGACTTGAAGCAGTGGAATGACCTTTATGGGGAAGGTGGTTCAAGGAAGAAAGAACAATTATCTTATTTCCTATGA 2532 0.4258 MEQKGLLLSALSVGVGVGVGLGLASGQTKWGANTSASNAITPEKIEHEMLRLVVDGRESNVTFDNFPYYLSEKTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLFDVTDFSLKIQSRYGSSNNEISFKRSTSDTTLARLSDLFGSFSIFPPREETRGRMKKQHSGVDLKRMEAEGTYTPNKLRRNASASANISSLGSQSNSTSSAPGKHMANWSFDEKLLIQTLYKALVYVSKTYPIVLYLRDVDKLLCRSQRICKLFQTMLTKLSGPILILGSRVLDSGNECEEVDEMLSPLFPYNIEISPPEDESRLVSWKSQFEADMKRIQIQDNKNHIMEVLAANDLDCHDLDSICVADTMVLSNYIEEIVVSAISYHLMNNKEPEYRNGKLVIPCNSLSHALGIFHEGKLSGRDTLKLEAQAVTSEQREEGAVVKPEEKSENPAPGIKTENPAPGVKTETEILTSVGKTDGENSVPATKAEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALEETKESLQELVMLPLRRPDLFDGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTNWDGLTSKPSDRILVLAATNRPFDLDEAIIRRFERRIMVALPSVANRENILRTLLAKEKVDNRLDFKEIATMTEGYSGSDLKNLCTTAAYRPVRELIQQELKKDSEKKKKDAEGKNSQDVHDAEEEVKQERVITLRPLNMEDFKVAKNQVAASFAAEGAGMNDLKQWNDLYGEGGSRKKEQLSYFL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08038 843 MobiDBLite consensus disorder prediction 448 477 - -
Vifa1g08038 843 Gene3D - 526 786 IPR027417 -
Vifa1g08038 843 ProSitePatterns AAA-protein family signature. 670 689 IPR003960 GO:0005524|GO:0016887
Vifa1g08038 843 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 842 - -
Vifa1g08038 843 MobiDBLite consensus disorder prediction 759 783 - -
Vifa1g08038 843 Gene3D - 699 782 - -
Vifa1g08038 843 Pfam ATPase family associated with various cellular activities (AAA) 567 696 IPR003959 GO:0005524|GO:0016887
Vifa1g08038 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 765 IPR027417 -
Vifa1g08038 843 MobiDBLite consensus disorder prediction 453 467 - -
Vifa1g08038 843 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 526 701 - -
Vifa1g08038 843 SMART AAA_5 563 700 IPR003593 GO:0016887
Vifa1g08038 843 Pfam AAA+ lid domain 721 760 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08038 Vifa-Chr1 1255970426 1255976002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08038 527 757 Calmodulin-binding Proteins AT3G56690 37.179 2.43e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08038 - - gmx:100808011 1288.09