Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08037 ATGGAACAGAAAGGTTTGTTGTTATCAGCGCTTAGCGTTGGTGTTGGAGTTGGAGTCGGCCTTGGTTTGGCTTCTGGACAAACCAAATGGGGAGCTAATACTTCTGCCTCCAACGCCATCACGCCGGAGAAAATCGAACACGAAATGCTTCGACTTGTTGTTGATGGAAGAGAAAGCAATGTCACTTTTGACAATTTCCCTTATTATCTCAGTGAGAAGACAAGGGTGTTGCTGACAAGTGCTGCCTATGTCCATTTAAAGCATGCAGAGGTTTCTAAATATACACGGAATCTCGCACCTGCAAGCCGGACTATTCTGCTCTCAGGGCCAGCCGAGCTTTACCAACAGGTGCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCCAAGTTGCTTCTGTTCGATGTAACTGACTTTTCTTTGAAGATTCAAAGTAGATATGGCTCTTCCAACAACGAAATTTCTTTCAAAAGATCTACTTCGGACACAACTTTAGCTCGGTTATCTGACCTATTTGGTTCGTTTTCAATCTTTCCACCGAGAGAAGAGACTAGAGTTGCAGGTAGAATGAAAAAGCAACACAGTGGCGTAGACCTTAAACGAATGGAGGCGGAAGGAACTTATACTCCTAATAAACTTCGTAGGAATGCATCAGCCTCTGCAAATATTAGCAGCCTTGGTTCGCAAAGCAATTCTACAAGCTCAGCTCCCGGGAAGCACATGGCCAACTGGTCTTTTGATGAAAAGCTTCTTATACAGACTCTTTACAAGGCTCTAGTTTATGTGTCAAAAACCTATCCCATTGTTCTATATCTGCGGGATGTTGATAAGCTGTTGTGTAGATCACAGAGGATATGTAAACTATTCCAGACAATGTTAACGAAATTATCCGGACCGATTTTGATTCTTGGTTCAAGGGTTTTGGATTCTGGTAATGAATGCGAAGAAGTGGATGAGATGCTTAGCCCCCTCTTCCCTTACAACATAGAAATCAGCCCACCAGAAGATGAGTCTCGTCTTGTCAGCTGGAAGTCTCAATTTGAAGCAGATATGAAGAGGATACAGATTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTCATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTGTTGTGTCAGCAATTTCCTATCATTTAATGAATAACAAAGAGCCTGAATACAGAAATGGGAAACTGGTTATTCCATGCAATAGCTTGTCCCATGCTCTGGGTATATTCCACGAGGGAAAACTCAGTGGAAGAGATACATTAAAACTAGAAGCTCAAGCAGTTACATCTGAGCAGAGAGAGGAAGGAGCTGTTGTGAAACCAGAAGAAAAGTCTGAAAATCCTGCTCCTGGTATAAAGACTGAAAATCCTGCTCCTGGTGTAAAGACCGAAACAGAAATACTAACTTCGGTGGGCAAAACTGATGGTGAAAATTCCGTTCCTGCAACCAAAGCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAAGTAATACCAGCAAATGAAATTGGGGTAACATTCTCCGATATTGGTGCCTTAGAAGAGACTAAAGAGTCACTTCAAGAACTAGTAATGCTTCCCCTTCGAAGGCCAGACCTTTTTGATGGGGGCCTTTTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCGCCTGGAACAGGAAAAACAATGCTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTAGCAGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTGGATAGTATGCTTGGGCAGCGGACAAGAGTCGGGGAACATGAAGCCATGCGGAAAATAAAGAATGAATTTATGACCAATTGGGATGGACTTACCTCAAAACCGTCGGATCGCATCCTTGTCCTGGCTGCAACCAATAGGCCCTTTGACTTGGATGAGGCAATTATTAGACGATTTGAAAGGAGGATTATGGTTGCATTACCATCTGTGGCGAACAGGGAAAATATATTGAGGACCCTTTTGGCTAAAGAGAAGGTGGACAATAGACTTGATTTTAAGGAAATCGCAACTATGACAGAAGGATACAGCGGAAGCGATCTAAAGAACTTATGCACAACCGCTGCTTATAGACCTGTTAGAGAGTTAATTCAGCAAGAGTTAAAAAAGGATTCGGAGAAAAAGAAGAAAGATGCCGAAGGAAAAAATAGCCAAGATGTTCATGATGCAGAGGAGGAAGTTAAACAGGAAAGAGTTATTACCCTTAGGCCTTTGAATATGGAGGACTTCAAAGTGGCAAAGAATCAGGTTGCCGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAATGACTTGAAGCAGTGGAATGACCTTTATGGGGAAGGTGGTTCAAGGAAGAAAGAACAATTATCTTATTTCCTATGA 2538 0.4259 MEQKGLLLSALSVGVGVGVGLGLASGQTKWGANTSASNAITPEKIEHEMLRLVVDGRESNVTFDNFPYYLSEKTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLFDVTDFSLKIQSRYGSSNNEISFKRSTSDTTLARLSDLFGSFSIFPPREETRVAGRMKKQHSGVDLKRMEAEGTYTPNKLRRNASASANISSLGSQSNSTSSAPGKHMANWSFDEKLLIQTLYKALVYVSKTYPIVLYLRDVDKLLCRSQRICKLFQTMLTKLSGPILILGSRVLDSGNECEEVDEMLSPLFPYNIEISPPEDESRLVSWKSQFEADMKRIQIQDNKNHIMEVLAANDLDCHDLDSICVADTMVLSNYIEEIVVSAISYHLMNNKEPEYRNGKLVIPCNSLSHALGIFHEGKLSGRDTLKLEAQAVTSEQREEGAVVKPEEKSENPAPGIKTENPAPGVKTETEILTSVGKTDGENSVPATKAEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALEETKESLQELVMLPLRRPDLFDGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTNWDGLTSKPSDRILVLAATNRPFDLDEAIIRRFERRIMVALPSVANRENILRTLLAKEKVDNRLDFKEIATMTEGYSGSDLKNLCTTAAYRPVRELIQQELKKDSEKKKKDAEGKNSQDVHDAEEEVKQERVITLRPLNMEDFKVAKNQVAASFAAEGAGMNDLKQWNDLYGEGGSRKKEQLSYFL 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08037 845 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 844 - -
Vifa1g08037 845 SMART AAA_5 565 702 IPR003593 GO:0016887
Vifa1g08037 845 Pfam ATPase family associated with various cellular activities (AAA) 569 698 IPR003959 GO:0005524|GO:0016887
Vifa1g08037 845 Gene3D - 528 788 IPR027417 -
Vifa1g08037 845 MobiDBLite consensus disorder prediction 455 469 - -
Vifa1g08037 845 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 528 703 - -
Vifa1g08037 845 Gene3D - 701 784 - -
Vifa1g08037 845 MobiDBLite consensus disorder prediction 450 479 - -
Vifa1g08037 845 ProSitePatterns AAA-protein family signature. 672 691 IPR003960 GO:0005524|GO:0016887
Vifa1g08037 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 767 IPR027417 -
Vifa1g08037 845 MobiDBLite consensus disorder prediction 761 785 - -
Vifa1g08037 845 Pfam AAA+ lid domain 723 762 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08037 Vifa-Chr1 1255970426 1255976002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08037 529 759 Calmodulin-binding Proteins AT3G56690 37.179 2.54e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08037 - - gmx:100808011 1283.09