Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08036 ATGGGCAACCGCAGCAGCAGAACCAAAACGAAACCCTCCCCCGATTCCCAAACCGAATCCCATTCAAAATCAAACCCCAAACATTCCGCTCTCACTTCCTTCCCCCCTCCAAATCAACCAACCCCAACCCCCGTTGGCCGCGTCTTAGGCCGGCCCATGGAAGACGTCCGATCCACCTACATCTTCGGCCGCGAACTAGGTCGCGGCCAATTCGGAGTCACATACCTAGTAACTCACAGAGTCACCAAGGAACAATTCGCCTGCAAATCAATCGCGACTAGGAAGCTAATCCGCCGCGATGATCTGGACGATATCCGCCGTGAAGTTCAGATCATGCATCACCTCACCGGTCACCGTAACATCGTTGAGCTTAAAGGTGCTTATGAGGATCGGCATTCTGTTAACCTCATCATGGAGCTTTGTGCCGGTGGTGAACTCTTTGATAGGATTATATCTAAAGGACATTACTCCGAACGTGCTGCTTCTGAATTGTGTCGCCAGATGTTGGCCGTTGTTCATAATTGTCACACCATGGGAGTTATGCATAGGGATTTGAAGCCAGAGAATTTCTTGTTTCTCAGTAAATATGAAACTTCGCCTCTTAAAGCCACTGATTTCGGTCTCTCTGTGTTTTTCAAGCCCGGAGATGTATTTAAAGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAATTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATTTTGTATATTCTCCTCTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTCGATGCTATTCTTCATGGACATATTGATTTCGAATCAGAACCTTGGCCTAAGATATCAAGCAATGCTAAAGATCTGATCAAGAAGATGTTGCGAGCTGACCCTAAAGAACGACTTTCAGCTGTTGAAGCCCTTAATCATCCTTGGATGAGATATGATGGAGCACCCGATAAGCCTCTCGATATTGCTGTTTTAACCAGAATGAAGCAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGACTGAAGGAAATGTTTAAATCCATAGACACAGATAACAGTGGAACAGTCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTAGGTACTAAGATATCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTTGACGGAAATGGAAGCATTGATTACATTGAATTTATAACAGCTACCATGCACTTGAATAGAATGGAAAGAGAGGACCACCTATTCAAAGCTTTTGAACATTTTGACAAGGACAAAAGCGGGTACATTACAAAGGAAGAGTTGGAAACTGCCCTTACAAAGTATAACATGGGGGATGAGAAAACAATAAAGGAGATCATTGACGAAGTCGATTCAGACAATGATGGAAGGATTAACTATGAGGAGTTTGTAGCGATGATGAGGCAAGGCAACCCAGATTTGAACAAACATCGCAAATGA 1527 0.442 MGNRSSRTKTKPSPDSQTESHSKSNPKHSALTSFPPPNQPTPTPVGRVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHRVTKEQFACKSIATRKLIRRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAASELCRQMLAVVHNCHTMGVMHRDLKPENFLFLSKYETSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRNYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILHGHIDFESEPWPKISSNAKDLIKKMLRADPKERLSAVEALNHPWMRYDGAPDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSIDTDNSGTVTFEELKAGLPKLGTKISESEVRQLMEAADVDGNGSIDYIEFITATMHLNRMEREDHLFKAFEHFDKDKSGYITKEELETALTKYNMGDEKTIKEIIDEVDSDNDGRINYEEFVAMMRQGNPDLNKHRK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08036 508 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Vifa1g08036 508 FunFam Calcium-dependent protein kinase 1 325 500 - -
Vifa1g08036 508 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Vifa1g08036 508 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Vifa1g08036 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 492 - -
Vifa1g08036 508 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Vifa1g08036 508 Gene3D Transferase(Phosphotransferase) domain 1 146 323 - -
Vifa1g08036 508 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08036 508 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Vifa1g08036 508 SUPERFAMILY EF-hand 356 497 IPR011992 -
Vifa1g08036 508 Pfam EF-hand domain pair 435 497 IPR002048 GO:0005509
Vifa1g08036 508 Pfam EF-hand domain pair 365 425 IPR002048 GO:0005509
Vifa1g08036 508 CDD STKc_CAMK 60 317 - -
Vifa1g08036 508 SUPERFAMILY Protein kinase-like (PK-like) 57 319 IPR011009 -
Vifa1g08036 508 FunFam calcium-dependent protein kinase 1 146 325 - -
Vifa1g08036 508 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Vifa1g08036 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vifa1g08036 508 Gene3D - 325 501 - -
Vifa1g08036 508 ProSiteProfiles EF-hand calcium-binding domain profile. 468 502 IPR002048 GO:0005509
Vifa1g08036 508 FunFam Calcium-dependent protein kinase 1 62 145 - -
Vifa1g08036 508 SMART efh_1 400 428 IPR002048 GO:0005509
Vifa1g08036 508 SMART efh_1 436 464 IPR002048 GO:0005509
Vifa1g08036 508 SMART efh_1 364 392 IPR002048 GO:0005509
Vifa1g08036 508 SMART efh_1 471 499 IPR002048 GO:0005509
Vifa1g08036 508 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Vifa1g08036 508 MobiDBLite consensus disorder prediction 1 32 - -
Vifa1g08036 508 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Vifa1g08036 508 Pfam Protein kinase domain 62 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08036 508 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Vifa1g08036 508 MobiDBLite consensus disorder prediction 1 50 - -
Vifa1g08036 508 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08036 Vifa-Chr1 1255585534 1255590070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08036 46 508 EF-hand Containing Proteins AT4G23650 79.526 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa1g08036 Pkinase 1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08036 K13412 - gmx:100777096 843.573