Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08027 ATGGCTTCTTCCATCAAAATCTCTAGGCTCATTTCTCGCTCAATTTCTTCTGCATCTTCTTCTACCTTGTTCTCTCGAGGTGGGAATGGCGGTTATCAGGGTGGATTACTTGCTAAATATAGCACAGCTGTTGTTGTTGATGAACAGCCGATTAAACCGTTGGTGCAAGTAGAGCATATTGGGCTCTTAATTGATGGAAAGTTTGTTGATGCTGCTTCTGGGAAAACATTTCCAACATTGGATCCGAGGACCGGGGAAGTGATTGCCCATGTTGCGGAGGGTCACTCTGAAGATATTGATAGGGCTGTTGCAGCTGCACGCAAAGCATTCGATATAGGCCCGTGGCCTAAGATGACAACCTATGAAAGGCAAAAGATAATGTTGCGTGCTGCTGATCTGATTGAGAAACATAACGATGAGATTGTGACACTTGAGACTTGGGATAATGGGAATCCGTATGAACAATCTCGTCAAGTTGAAATTCCAATGTTGGTTCGCCTAATTCGGTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGACGGAGCCTATCATGTGCAGACATTGCATGAACCGATTGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTCGGTCCGGCGTTGGCATGTGGCAACACTGTCGTTATGAAAACAGCCGAGCAGACACCACTGTCTGCGTTGTATACATCAAGACTATTTCTTGAGGCTGGACTTCCTCCTGGCGTGTTGAATATAGTGTCCAGCTTCGGTCCAACGGCAGGTGCTGTTCTTGCTAGTCACATGGATGTTGACAAGGTTGCATTCACTGGTTCAACTGCAACTGGCAAAGTTATTCTTCTACTTGCAGCTCAAAGCAATCTTAAACAAGTAACTTTGGAGCTTGGCGGGAAATCTCCGTTTATTGTATGCGAAGATGCTGACGTAGATCAGGCTGTTGAGCTAGCACACTTTGCCCTATTCTTCAATCAAGGACAATGTTGCTGTGCTGGGTCTCGTACATTTGTACATGAACGTGTGTATGACGAGTTTGTCGAGAAAGCTAAGATCCGCGCTTTGAACCGTTCTGTTGGAGATCCATTCAAGTCAGGAATAGAACAAGGCCCTCAGATTGATTCAAAGCTATTTGAGAAAATATTGAGATATATCAGATCTGGTGTCGACACTGGGGCTACTCTTGAAACTGGCGGAGAAAGGCATGGCAGCAAGGGCTACTATATTCAGCCTACTGTTTTCTCAGACGTTCAGGATGACATGCCGATCGCAAAAGAAGAGATATTTGGTCCAGTACAAACCATATTAAAATTCAAGAACAATGAAGATGTAATTCAAAGAGCAAACAATTCGAAGTATGGTCTTGCAGCAGGGATCTTCACACAAAACATAGACACTGCTAATACTTTGACAAGAGCATTGAAAGTTGGGACAGTTTGGGTGAGTTGTTATGATGTATTTGATGCTACAATTCCTTTTGGTGGGATTAAGACTAAATAG 1533 0.441 MASSIKISRLISRSISSASSSTLFSRGGNGGYQGGLLAKYSTAVVVDEQPIKPLVQVEHIGLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDIDRAVAAARKAFDIGPWPKMTTYERQKIMLRAADLIEKHNDEIVTLETWDNGNPYEQSRQVEIPMLVRLIRYYAGWADKIHGLTVPADGAYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVMKTAEQTPLSALYTSRLFLEAGLPPGVLNIVSSFGPTAGAVLASHMDVDKVAFTGSTATGKVILLLAAQSNLKQVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKIRALNRSVGDPFKSGIEQGPQIDSKLFEKILRYIRSGVDTGATLETGGERHGSKGYYIQPTVFSDVQDDMPIAKEEIFGPVQTILKFKNNEDVIQRANNSKYGLAAGIFTQNIDTANTLTRALKVGTVWVSCYDVFDATIPFGGIKTK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08027 510 SUPERFAMILY ALDH-like 54 508 IPR016161 GO:0016491
Vifa1g08027 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Vifa1g08027 510 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Vifa1g08027 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 501 IPR016163 GO:0016620
Vifa1g08027 510 Pfam Aldehyde dehydrogenase family 68 508 IPR015590 GO:0016491
Vifa1g08027 510 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 64 321 - -
Vifa1g08027 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 508 IPR016162 GO:0016491
Vifa1g08027 510 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 50 509 - -
Vifa1g08027 510 FunFam Mitochondrial aldehyde dehydrogenase 2 312 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08027 Vifa-Chr1 1254621848 1254623380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08027 6 508 Aldehyde Dehydrogenase Gene Family AT3G48000 73.757 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08027 K00128 - gmx:100786773 821.231