Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08009 ATGAGTTATTATTATTATTATTATTACATTTTTCTGTTTTCACTTTACTTCATTGGTTTCTTAGTGTGTCAATGCAATGCAGAACCTGTTGAAGACAAAAAAGCATTGTTAGAGTTTGTTACTAAATTACCACATTCTAAGCCTTTGAATTGGAATTTGAGTTCTTCAGTGTGTTCTACTTGGAATGGTGTAACTTGTAGTTTAGATCAGTCTCGAATCATCGCGATTCGATTACCGGGATTTGGATTTAATGGCACAATTCCTGTTAATACTATTAGTAGAATCAAAGGTTTGCAGAAATTGAGTCTTGGGTCTAATTTTATAGGTGGTTATTTTCCTGATGATTTTGTTAATTTGAAGAATCTTTCTCTTTTGTATCTTCAGTTCAATGATTTTGTAGGTCCTTTACCTGATTTTGGTGTTTGGAGGAACTTATCTGTTGTTGATTTGTCTAATAATAGATTCAGTGGTGAAATTCCCGATGTAAACTTGCCTTTGTTGGAACAATTGAATTTGTCTAACAACAATTTACAAGGTGTTGTTCCTGTTTCACTTAGGAGGTTTCCGAATTCGGGGTTTGCTGGAAACAATGTTTCTCTTGCAAGTTGTTTGATGCATTGTTCGAAATCTGAGAAACATGGGAGGGTTGGTGGAACATTAGTGTTGGGAAGTATTGTTGTTGGTGGTTTTTTATGCCTTGCAGCATTTATTGTTTTTATGTATGTTTTGTGTTCTAAGAGGAAAGATTGTGATGTTTTTGATGCCAAGTTGGAGAAAGGAGGGAAAATGTCACCTGAAAAAGTGGTTTCTAGAAACCAAGATGCAAACAATAAGCTTTTTTTCTTTGAGGGGTGTAACTATGCTTTTGATTTGGAGGATTTGTTAAGAGCTTCTGCTGAGGTACTTGGTAAGGGAACATTTGGTGCCGCATACAAGGCTGTACTAGAGGATGCAACCACTGTAGTCGTGAAGAGGTTGAAAGAGGTAGCTGTCGGAAAGAAGGATTTTGAGCAACACATGAATGTTGTTGGAAGTCTTAAACATGAAAATGTGATTGAGTTAAAGGCGTATTACTATTCCAAAGACGAGAAACTTGTCGTATATGACTACTATAGTCAGGGTAGCATCTCTGCTTTGTTGCATGGTAAGAGAGGAGAGGAGAAGGTGGCTTTAGATTGGAATACTCGGATCAAAATAGCTTTAGGTGCTGCACGAGGCCTTGCTCGTATCCATTCTGAAAATGGTGGGAAACTTATACACGGCAATATCAAATCCTCAAACATCTTTCTTAACACTAAACAGTATGGTTGTGTGTCTGATCTTGGCCTGGCAACCATAATGAGCTCAGTCTGCCAGCCTATCTCGCGAGCAGCTGGTTACCGGGCACCAGAAGTTACAGACACCAGAAAAGCAACACAGGCTTCGGATGTTTACAGCTTTGGTGTGGTGTTACTAGAACTTCTAACTGGGAAATCTCCTATCCATACGACTAGAGGAGATGAGATTGTCCACCTTGTGAGATGGGTTCATTCTGTTGTGAGAGAGGAGTGGACGGCTGAAGTATTTGACCTCGAGCTTATGAGATGTCCTAATATAGAAGAAGAGATGGTGGAGATGTTACAGATAGCTATGTCATGTGTTGTAAGGATGCACGATCAAAGACCTAACATGTCAGAAATTGTGAAGATGATTGAGAATGTGAAGCAAGTCGATTCAGAGAATCCACCATCATCTGAGAACCAAGTTGAAAATGCAACACAGCATAAATCCTCTCAAGGTGACAGTCCACCTCCTACCAAAGGAGATGAATAA 1812 0.3896 MSYYYYYYYIFLFSLYFIGFLVCQCNAEPVEDKKALLEFVTKLPHSKPLNWNLSSSVCSTWNGVTCSLDQSRIIAIRLPGFGFNGTIPVNTISRIKGLQKLSLGSNFIGGYFPDDFVNLKNLSLLYLQFNDFVGPLPDFGVWRNLSVVDLSNNRFSGEIPDVNLPLLEQLNLSNNNLQGVVPVSLRRFPNSGFAGNNVSLASCLMHCSKSEKHGRVGGTLVLGSIVVGGFLCLAAFIVFMYVLCSKRKDCDVFDAKLEKGGKMSPEKVVSRNQDANNKLFFFEGCNYAFDLEDLLRASAEVLGKGTFGAAYKAVLEDATTVVVKRLKEVAVGKKDFEQHMNVVGSLKHENVIELKAYYYSKDEKLVVYDYYSQGSISALLHGKRGEEKVALDWNTRIKIALGAARGLARIHSENGGKLIHGNIKSSNIFLNTKQYGCVSDLGLATIMSSVCQPISRAAGYRAPEVTDTRKATQASDVYSFGVVLLELLTGKSPIHTTRGDEIVHLVRWVHSVVREEWTAEVFDLELMRCPNIEEEMVEMLQIAMSCVVRMHDQRPNMSEIVKMIENVKQVDSENPPSSENQVENATQHKSSQGDSPPPTKGDE 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08009 603 PANTHER OS05G0588300 PROTEIN 17 578 - -
Vifa1g08009 603 ProSiteProfiles Protein kinase domain profile. 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08009 603 MobiDBLite consensus disorder prediction 568 603 - -
Vifa1g08009 603 Gene3D Ribonuclease Inhibitor 30 207 IPR032675 -
Vifa1g08009 603 Gene3D Transferase(Phosphotransferase) domain 1 372 593 - -
Vifa1g08009 603 MobiDBLite consensus disorder prediction 570 597 - -
Vifa1g08009 603 ProSitePatterns Protein kinases ATP-binding region signature. 302 333 IPR017441 GO:0005524
Vifa1g08009 603 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Vifa1g08009 603 Pfam Protein kinase domain 299 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08009 603 Gene3D Phosphorylase Kinase; domain 1 262 370 - -
Vifa1g08009 603 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 371 578 - -
Vifa1g08009 603 SUPERFAMILY L domain-like 41 191 - -
Vifa1g08009 603 SUPERFAMILY Protein kinase-like (PK-like) 300 565 IPR011009 -
Vifa1g08009 603 FunFam pollen receptor-like kinase 1 265 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08009 Vifa-Chr1 1252773520 1252775565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08009 21 594 Receptor kinase-like Gene Family AT4G23740 57.464 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g08009 Pkinase 2.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08009 - - gmx:100804799 824.313