Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08005 ATGACTCAGTCACTAACGAAAAAACACACTCACCGTATCAACCTTACCAAAGAAAACACTTCAAAACATCCATTTCCCAAAATAGTCACAATAACATACACAGACAAAGACGCTACTGACTCCTCCAGCGACGAAGAAGAATCTTCAAAACGTAACCGAACAAAAAAGTTTGTTAACGAGATTATCATAGAGCCATGCGGTGGCCGCGGTAGCGGCCACGGTGCCGTTGTTCCGAGGAAGAGAAACAGAACTTCCACCGGTGGAAAAACAAGAGCTCCGGCGACTCCGCGAGTTACCTCCGGGCAGAAATACAGAGGAGTTAGGCAGCGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGTCGCGTGGCGTGCGCGTGTGGCTTGGCACGTTTCAAACTGCTGAAGAAGCTGCTATTGTGTACGACAACGCGGCTATTAAGCTGCGTGTTACCGTTACCGTTCTACAGTGTTGTTCATCTTCTGAAGAAGTAGCTGAATCCCTTACAACCGATAAAGAATCTGAATCACTGTTTTCAATTCCGAGTGATATACTATTTGATTTCCAAGGCTCTTCACCGGCCAACGATGACTTTAACAGCTTCAACACCTTGCCGGAGAACATGTTCTACGGCGATATCGATTCTTCGGAGCATTTCAATTTCGATTTCGATTTCGGTTTTGAAACTTTGCATATGCATAAGGATGAAGATTTTTTCCAGGATATTGACGATTTATTTGCTTCTGATGCTCTTGTTGCTCTTTAA 771 0.4553 MTQSLTKKHTHRINLTKENTSKHPFPKIVTITYTDKDATDSSSDEEESSKRNRTKKFVNEIIIEPCGGRGSGHGAVVPRKRNRTSTGGKTRAPATPRVTSGQKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFQTAEEAAIVYDNAAIKLRVTVTVLQCCSSSEEVAESLTTDKESESLFSIPSDILFDFQGSSPANDDFNSFNTLPENMFYGDIDSSEHFNFDFDFGFETLHMHKDEDFFQDIDDLFASDALVAL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08005 256 MobiDBLite consensus disorder prediction 1 53 - -
Vifa1g08005 256 SUPERFAMILY DNA-binding domain 103 152 IPR016177 GO:0003677
Vifa1g08005 256 ProSiteProfiles AP2/ERF domain profile. 103 164 IPR001471 GO:0003700|GO:0006355
Vifa1g08005 256 FunFam Ethylene-responsive transcription factor 2 102 159 - -
Vifa1g08005 256 CDD AP2 102 151 IPR001471 GO:0003700|GO:0006355
Vifa1g08005 256 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Vifa1g08005 256 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 175 - -
Vifa1g08005 256 Gene3D AP2/ERF domain 102 158 IPR036955 GO:0003700|GO:0006355
Vifa1g08005 256 MobiDBLite consensus disorder prediction 68 106 - -
Vifa1g08005 256 Pfam AP2 domain 103 151 IPR001471 GO:0003700|GO:0006355
Vifa1g08005 256 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Vifa1g08005 256 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08005 Vifa-Chr1 1251567968 1251568915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08005 3 151 AP2-EREBP Transcription Factor Family AT4G27950 49.673 6.47e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g08005 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08005 - - mtr:11438409 259.996