Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08004 ATGGAAGATCAACAAAAAAAACAACATGTTGAGACTCAAAGTTCCAACACCAATAATCCAAACAACACTGAAAAGAGTGAAACTGTGAGATCAAGATGGACACCAAAACCTGAACAAATCCTCATTCTTGAATCCATTTTCAATAGCGGAATGGTGAATCCACCAAAAGATGAAACTGTTAGAATAAGAAAACTTCTTGAAAAATTTGGACCTGTTGGTGATGCTAATGTTTTCTATTGGTTTCAAAATCGTCGCTCTCGCTCTCGTCGTCGTCAGAGACAGCTTCAGGCCGCGGCCGAATTAGCCGGAGGAGGCGGTGCAAATCTTTACCACCAATACCAGTGCAACACCAACAGTAATAATATTATGTCTGTTGGTGCTGCTATCGGTTTTGGTGGTTCATCTGATCTAACTATGATGAACTCTCCTTCTGGTTCTTCTTATAATCATAATTTTTCGAGTTCATCTTCATCATCCGGTGTTGGTGTTGGTGTCGGTGTCAGTATCGAAGGGTTTCCTGGTTTATTTTTAGGTTCTTCTCAAATTAATTTTCCTGAGATTGGTCATACTTCTGCTGCTTCATCAGTTTTGAACCCTTCTCATGATCATGCTTTAAATTTGAACTATCATCATTCAGGATTTGGGGGGAGTGATGTTTCAGGTTTGATCACAGTGTATATCAATGGAGTTGCAACAGAAGTAGCAAGAGGTGCAATTGACATGAAAACAGTGTTTGGTGAAGATGTTATGTTAATTCATTCATCTGGAGTGTCAGTTCCAACCAATGAGTTTGGTATCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTATTTTCTGGTCTCAAAGCAAACACGAGCATGA 861 0.3984 MEDQQKKQHVETQSSNTNNPNNTEKSETVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGPVGDANVFYWFQNRRSRSRRRQRQLQAAAELAGGGGANLYHQYQCNTNSNNIMSVGAAIGFGGSSDLTMMNSPSGSSYNHNFSSSSSSSGVGVGVGVSIEGFPGLFLGSSQINFPEIGHTSAASSVLNPSHDHALNLNYHHSGFGGSDVSGLITVYINGVATEVARGAIDMKTVFGEDVMLIHSSGVSVPTNEFGILMQSLQHGESYFLVSKQTRA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08004 286 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 283 IPR044558 GO:0003700|GO:0048830
Vifa1g08004 286 Pfam Homeodomain 30 90 IPR001356 GO:0003677
Vifa1g08004 286 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g08004 286 Gene3D - 30 97 - -
Vifa1g08004 286 SMART HOX_1 28 95 IPR001356 GO:0003677
Vifa1g08004 286 MobiDBLite consensus disorder prediction 10 28 - -
Vifa1g08004 286 SUPERFAMILY Homeodomain-like 24 97 IPR009057 -
Vifa1g08004 286 FunFam WUSCHEL-related homeobox 11 30 97 - -
Vifa1g08004 286 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08004 Vifa-Chr1 1251238054 1251241185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08004 13 284 Wox Gene Family AT5G17810 49.310 1.63e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa1g08004 Homeodomain 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08004 - - lang:109335690 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08004 1 1251238054 1251241185 Vifa1g08004 1 1251238054 1251241185 ECH