Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08003 ATGGCGAAAGAGCTTGAGAACAAAGCCAAAGAAGCGTTCTTCGATGACGATTTTTCTCTAGCCGTTGATCTCTATTCTCAGGCCATACAACTCGATCCCACCAACGCAAATCTCTTCGCCGATAGAGCTCAAGCACATATCAAACTCAACGCTTTCACTGAAGCTGTTTCTGATGCTAATAAGGCTATTCAATTAAACCCTACTTTATCCAAGGCTTATATCCGCAAGGGGACTGCTTGTATTAATCTTGAAGAATATCATACTGCTAAGGTTGCACTTGAAAAGGGTGCTTCCATTGCACCCGAAGAGTCTAGGTTTACCAATTTGATTCAACAATGTGAACACTACATTGCTGAGGAATCAGATAGTCTTTCTGGTATTCTATCACCAAGTGGACCCAAAACTTCTGTACCATCTGTTGATGATACCCATATGTGTGATAAAGGTGATGGAACAGGAACTTCCAAAGAACCTCAAAGAGACAGTCCTGCATCTGAAACAAACGAAGCTGCACCAGTCAGACCAAAATACAGACATGAATATTACCAGAAGCCCGAAGAAGTGGTTGTGACAATATTCGCAAAAGGAATACCAGCAGACAATGTTGTTGTGGACTTCGGTGAACAAATTCTGAGTGTTACCATTAATGTTCCTGGCCAAGAAGCCTATCTTTATCAACCTCGGTTGTTTGGAAAGATAATACCTGCTAAGTCCAAAGTTTTGGTGTTGTCAACCAAAGTTGAAGTTCGTCTGGCAAAAGCTGAGGCTATTAATTGGACATCTCTGGAATATTGCAAGGGCGTGGTTCCTCAGAAAATAAGCGTGCCTGCAATTCAATCTGAAAGGCCTACATATCCGTCATCAAAGTCAAGGACTAAGGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGACGGTGACGCTGCTTTGAATAAATTGTTCCGTGATATTTATCAAAATGCAGATGAGGACATGAGGAGAGCCATGAGCAAGTCTTTTCTGGAATCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCAGAAGGCATGGAAGTGAAGAAATGGGAGTATTGA 1128 0.4176 MAKELENKAKEAFFDDDFSLAVDLYSQAIQLDPTNANLFADRAQAHIKLNAFTEAVSDANKAIQLNPTLSKAYIRKGTACINLEEYHTAKVALEKGASIAPEESRFTNLIQQCEHYIAEESDSLSGILSPSGPKTSVPSVDDTHMCDKGDGTGTSKEPQRDSPASETNEAAPVRPKYRHEYYQKPEEVVVTIFAKGIPADNVVVDFGEQILSVTINVPGQEAYLYQPRLFGKIIPAKSKVLVLSTKVEVRLAKAEAINWTSLEYCKGVVPQKISVPAIQSERPTYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08003 375 PANTHER PROTEIN SGT1 HOMOLOG 1 373 IPR044563 GO:0051087
Vifa1g08003 375 Pfam SGS domain 293 373 IPR007699 -
Vifa1g08003 375 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Vifa1g08003 375 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Vifa1g08003 375 ProSiteProfiles CS domain profile. 174 263 IPR007052 -
Vifa1g08003 375 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Vifa1g08003 375 MobiDBLite consensus disorder prediction 141 155 - -
Vifa1g08003 375 FunFam Protein SGT1 homolog 1 126 - -
Vifa1g08003 375 CDD p23_CS_SGT1_like 180 263 - -
Vifa1g08003 375 MobiDBLite consensus disorder prediction 356 375 - -
Vifa1g08003 375 SUPERFAMILY HSP20-like chaperones 168 268 IPR008978 -
Vifa1g08003 375 MobiDBLite consensus disorder prediction 124 174 - -
Vifa1g08003 375 Pfam CS domain 178 253 IPR007052 -
Vifa1g08003 375 MobiDBLite consensus disorder prediction 124 138 - -
Vifa1g08003 375 SMART tpr_5 36 69 IPR019734 GO:0005515
Vifa1g08003 375 SMART tpr_5 2 35 IPR019734 GO:0005515
Vifa1g08003 375 SMART tpr_5 70 103 IPR019734 GO:0005515
Vifa1g08003 375 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Vifa1g08003 375 FunFam Protein SGT1 homolog A 172 276 - -
Vifa1g08003 375 Gene3D - 175 266 IPR008978 -
Vifa1g08003 375 ProSiteProfiles SGS domain profile. 284 375 IPR007699 -
Vifa1g08003 375 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Vifa1g08003 375 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08003 Vifa-Chr1 1250399537 1250404567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08003 1 100 U-box Gene Family AT3G07370 29.000 1.70e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08003 K12795 - gmx:100784022 538.88