Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08000 ATGGAATCTATGTTTCAAGAAGAAGGGTCTTCATCTGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCACTTTCACCTGGCATAGGAGGAATAGGATCTCCATATCCATGGCTGAGTAGAGAATTGAAATCTGAAGAAAGGGGTTTGTATTTGATTCATTTGTTACTCACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAACAGATTTCTCAGCTTGCTTCTCCTGATGGAGACACTATGCAGAGAATTGCTGCATATTTCACTGGAGCACTTGCTGATAGGATACTCAAAACTTGGCCTGGACTTCACAGAGCCTTGAATTCCACAAGAATCGTTATGCTTTCTGAAGAGATTCTTGTTCAGAAGTACTTTTTTGAGCTTTTCCCTTTCTTGAAAGTGGCTTATATTATGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATCATTGATCTGAATGCTGCTGAACCTGCACAATGGATTGCACTTTTTCAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACAGGGATTCATCAGCAGAAAGAGGTTTTGGATCAAATGGCTCATAAGCTTTCTGAAGAAGCTGAAAAATTGGATATACCATTCCAATTCAATCCTGTTGTTAGCAAGCTAGAAAATCTTGATTTCGACAAACTTCGTGTGAAAACCGGGGAAGCGCTTGCAATAAGTTCTATACTGCAATTACATTCTCTTTTGGCTTTGGATGATGAATCATCATCCTCAAGGCGAAAAACTCCTATTCTGTCAAGAAACTCAAATGGACTTCACCTTCAAAAAGTCATGCTTATGAACCAAAGCACATCATTAGGTGATTTACTTGAAAAAGATATGATTAATGGCTATAGTCCAAGTCCCGATTCAGCATCGTCATCGTCTTCGCCAGCATCTTCAACTGCTTCAATGAATGCAGAGAGCTTTCTCAACGCCTTGTGGAGTTTATCGCCAAAAGTCATGGTTGTTACCGAACAGGATTCAAATCACAACGGTTCAACTCTAATGGAGAGGCTGCTTGAAGCTCTATATTCTTATGCAGCATTGTTCGATTGTTTGGAATCAACTGTGTCAAGAACATCAGTAGAGAGATTAAAGGTTGAGAAAATGCTGTTTGGTGAGGAAATCAAGAACATTATTGCTTGTGAAGGAGCTGAAAGAAAGGAAAGACATGAAAAGCTTGATAAGTGGTTTATGAGACTTGATTTGTGTGGTTTTGGTAATGTGCCTTTAAGCTATTATGGTATGTTACAAGCAAGAAGGTTTCTGCAGAGTTATGGTTGTGAGGGATACAGAATGAGAGAAGAAAATGGTTGTGTTGTAATTTGTTGGCAAGATAGGTCATTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTAA 1452 0.3905 MESMFQEEGSSSVTCSPLQLFSMMSLSPGIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTGALADRILKTWPGLHRALNSTRIVMLSEEILVQKYFFELFPFLKVAYIMTNQAIVESMEGEKMVHIIDLNAAEPAQWIALFQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKTPILSRNSNGLHLQKVMLMNQSTSLGDLLEKDMINGYSPSPDSASSSSSPASSTASMNAESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSVERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVICWQDRSLFSTTAWRARK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08000 483 Pfam GRAS domain family 53 480 IPR005202 -
Vifa1g08000 483 ProSiteProfiles GRAS family profile. 44 480 IPR005202 -
Vifa1g08000 483 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 476 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08000 Vifa-Chr1 1249679810 1249681261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08000 1 483 GRAS Transcription Factor Family AT1G50420 67.413 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g08000 GRAS 5.1e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08000 - - cave:132164091 737.643