Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07998 ATGAATGGTGAAGGTGACATGTGTGTTAATGATTCATGTTTCATGCTCTTTGGTAAGAAGATTCCGGTGCCGGAATATCATCTTCCGGTGAGTTCTCAGGTTCAGGCCAATTCTACAACCATGAAATCGAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTACTACCACCACTGTGGAAGATAACATTGAAACAAGCAGCAAAGAACAAGACAAAATCCTAAAGAAACCGGACAAGATTGTTCAGTGTCCAAGATGCAAGAGTTTCGACACGAAATTTTGTTATTTCAACAATTACAATGTCAACCAGCCTCGTCATTTCTGTCGGAGTTGTCATAGGTATTGGACAGCAGGTGGAACGATGAGAAACGTTGCTGTCGGTGCAGGGAGACGGAAGAACAAGCATATCACTAATGATAATGGTGGTGGTAACAATTGTAGAGAAAACGGAGATGAAGAATCGTCGTTATGTGTATCGTCTGTGACAAATGGTTATACTCGAGGAAACGAGTTATCCGAATCAGAACATAATATGCCAAAACATTTGCAGAGTTACCCTTCATCTTCATGGATAGTTCCATTGAATCAAAGGTGGAACAATGTTACTTCCATGGTTCAATCTTCAATGCAGATGTGTAACCCTTTTGGAATTGATCCTAATGCAATGCAGTGGTGTCACGCGCCGGTGGTCGCGGTCACGAACATTTTGACTCCAAACATTGGATTGCAATTTGTTCCAGGATCATATGGAAATGGAAATGTTTCAATAGGTTCAAATGGTTGCATTTCACCTTCTTCATCAACTACTAGTAACAGTTTTTGTGAAGGCAATACATTTGGTCTCCAGAGTATCGTTGAGAAGAGTGCTTGTTGA 876 0.4018 MNGEGDMCVNDSCFMLFGKKIPVPEYHLPVSSQVQANSTTMKSKNSSNEENESKVTTTTVEDNIETSSKEQDKILKKPDKIVQCPRCKSFDTKFCYFNNYNVNQPRHFCRSCHRYWTAGGTMRNVAVGAGRRKNKHITNDNGGGNNCRENGDEESSLCVSSVTNGYTRGNELSESEHNMPKHLQSYPSSSWIVPLNQRWNNVTSMVQSSMQMCNPFGIDPNAMQWCHAPVVAVTNILTPNIGLQFVPGSYGNGNVSIGSNGCISPSSSTTSNSFCEGNTFGLQSIVEKSAC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07998 291 MobiDBLite consensus disorder prediction 134 153 - -
Vifa1g07998 291 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Vifa1g07998 291 MobiDBLite consensus disorder prediction 139 153 - -
Vifa1g07998 291 PANTHER CYCLIC DOF FACTOR 2 10 260 IPR045174 GO:0003700|GO:0006355
Vifa1g07998 291 Pfam Dof domain, zinc finger 79 136 IPR003851 GO:0003677|GO:0006355
Vifa1g07998 291 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Vifa1g07998 291 MobiDBLite consensus disorder prediction 37 64 - -
Vifa1g07998 291 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07998 Vifa-Chr1 1248999489 1249001198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07998 11 135 C2C2-Dof Transcription Factor Family AT5G62430 50.400 4.92e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g07998 zf-Dof 6.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07998 - - psat:127125248 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07998 1 1248999489 1249001198 Vifa1g07998 1 1248999489 1249001198 ECH