Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07996 ATGGTCGCCGCCGCTATCTCAACCGTCACACTCACCGATGCCAATCTTCCCACCAAATTTCATTCCTCTTCTTCTACTCCATTCACCCTCAGTCTTCCACTCTCTCTTCATTTCCGCTTTTCTTCTCACTCCAAACGCTTTTCTTCTATCAGATGCCAATCGGTTAATGGTGAAAAACGGAAACAAAGTAGTAGAAATGTGTTTGACAACGCGAGCAACCTCCTTACGAGCTTGTTAAGTGGTGCAAATTTAGGGTCTATGCCCATAGCTGAAGGTGCTGTCACAGATTTGTTTGACCGGCCGCTGTTTTTCTCACTATATGATTGGTTCTTAGAGCATGGTTCTGTGTATAAACTGGCGTTTGGACCGAAAGCATTTGTTGTTGTATCAGATCCCATTGTTGCAAGACATATTCTGCGAGAAAATGCATTTTCTTATGACAAGGGAGTACTTGCTGATATCCTAGAACCAATTATGGGAAAAGGACTCATACCTGCAGACCTTGAGACATGGAAGCAAAGGAGAAGAGTGATTGCTCCGGGTTTCCATACCTCATACTTGGAAGCTATGGTACAACTATTCACTTCCTGTTCAGAAAGAACAGTGTTAAAGGTCAATAAGCTTCTCGAAGGAGAGGGGCATGATGGACAGAAGTCAGTTGAATTGGACCTTGAGGCAGAATTTTCAAATTTGGCTCTTGATATTATTGGGCTAGGTGTGTTCAACTATGACTTTGGTTCTGTCACCAATGAATCTCCTGTTATTAAGGCTGTCTATGGCACTCTTTTTGAAGCCGAACATAGATCCACTTTCTATATTCCATATTGGAAATTTCCATTAGCAAGGTGGATTGTGCCCAGACAAAGGAAGTTTCAGGATGACCTTAAAGTCATTAATACTTGTCTCGATGGACTTATCCGAAATGCAAAAGAGAGCAGGCAGGAAACAGATGTTGAGAAACTGCAGCAAAGGGATTACTCGAATTTGAAGGATGCAAGTCTTCTGCGTTTCCTAGTTGATATGCGGGGAGTTGATGTTGATGATCGCCAGTTGAGGGATGATTTAATGACAATGCTTATTGCTGGTCATGAGACGACTGCTGCAGTTCTTACATGGGCAGTTTTCCTGCTAGCTCAAAATCCTGACAAAATGAAGAAAGCTCAAGCAGAGGTAGATTCGGTGTTGGGGATGGGGAAGCCAACTTTTGAATTGCTTAAAAAGTTGGAGTACATGAGGTTAATTGTTGTGGAGACTCTTCGATTATATCCACAACCACCTCTGCTGATTAGACGTTCACTCAAGCCTGATGTTTTGCCAGGAGGGCATAAAGGTGACAAAGATGGGTATACAATTCCTGCTGGGACTGATGTCTTCATTTCTGTTTATAATCTCCATCGATCTCCATATTTTTGGGACCGCCCCAATGACTTCAAGCCTGAACGATTTCTGGTGCAAAACAAGAATGAAGAAGTTGAAGGGTGGGCTGGTTTTGACCCATCTCGAAGTCCTGGAGCCTTGTATCCAAATGAGATTATATCGGATTTTGCATTCTTGCCTTTTGGTGGCGGACCACGAAAATGCGTTGGAGACCAATTTGCTCTCATGGAATCCACTGTAGCACTAGCTATGCTGCTACAGAATTTCGATGTGGAACTGAAGGGGACCCCTGAATCGGTCGAACTAGTTACTGGGGCAACTATCCATACCAAAAATGGATTGTGGTGCAATTTGAGGAAGAGATCAAGTTTACATTGA 1755 0.4313 MVAAAISTVTLTDANLPTKFHSSSSTPFTLSLPLSLHFRFSSHSKRFSSIRCQSVNGEKRKQSSRNVFDNASNLLTSLLSGANLGSMPIAEGAVTDLFDRPLFFSLYDWFLEHGSVYKLAFGPKAFVVVSDPIVARHILRENAFSYDKGVLADILEPIMGKGLIPADLETWKQRRRVIAPGFHTSYLEAMVQLFTSCSERTVLKVNKLLEGEGHDGQKSVELDLEAEFSNLALDIIGLGVFNYDFGSVTNESPVIKAVYGTLFEAEHRSTFYIPYWKFPLARWIVPRQRKFQDDLKVINTCLDGLIRNAKESRQETDVEKLQQRDYSNLKDASLLRFLVDMRGVDVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPDKMKKAQAEVDSVLGMGKPTFELLKKLEYMRLIVVETLRLYPQPPLLIRRSLKPDVLPGGHKGDKDGYTIPAGTDVFISVYNLHRSPYFWDRPNDFKPERFLVQNKNEEVEGWAGFDPSRSPGALYPNEIISDFAFLPFGGGPRKCVGDQFALMESTVALAMLLQNFDVELKGTPESVELVTGATIHTKNGLWCNLRKRSSLH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07996 584 SUPERFAMILY Cytochrome P450 97 580 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PANTHER CYTOCHROME P450 FAMILY 4 112 580 - -
Vifa1g07996 584 Pfam Cytochrome P450 110 574 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS E-class P450 group I signature 350 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS E-class P450 group I signature 370 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS E-class P450 group I signature 527 550 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS E-class P450 group I signature 517 527 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS E-class P450 group I signature 110 129 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 520 529 IPR017972 GO:0005506|GO:0016705
Vifa1g07996 584 Gene3D Cytochrome P450 86 584 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 CDD CYP97 104 574 - -
Vifa1g07996 584 PRINTS P450 superfamily signature 413 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS P450 superfamily signature 518 527 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS P450 superfamily signature 527 538 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07996 584 PRINTS P450 superfamily signature 361 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07996 Vifa-Chr1 1248753198 1248760285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07996 41 581 Cytochrome P450 AT4G15110 77.716 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07996 K24543 - gmx:606504 998.038