Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07986 ATGTCTACCTTGAAAATTTATTTCATATTTTCCATATTTCTCTTGCTTTTTCACTCACCAGAAAGCATAACTCCAGGTAATTGTGTAAAGAGATATTGTGGAAACCCTGAGTTAGGTCTTCTTTTTGAGTTCCCTTTCATATTAAGAGGAAGATTTCAGAGTTACAATTATCAAAGTCATCGATGTGGATACCCAGGGTTTGAAGTTCATTGTGACGATAATAAGCAAGCTTTGCTTAAACTCTCAAATGATAGAAATTTTGTAGTAAAAAGTATATCCTTTGAGAGACAAAGAATTTGGGTTAACGGTCCCAATGATTGTCCACCACAAAGGTTCATTGAAAACATAAACATCAACGATGATTTACCTTTTGTATGGGACAACACTTATCGTAAATATTATGAAAATGTTACATTTCTCAACTGTAGTACCAATTCTGCAAAGGAACCAAATCCAGCGATTGATGAACTTCCAACTATATCTTGTATGAGCAATGCAAATTACTCGATTATGTACACGTTGCAATCATCTCTTGTTGATTCGTTGAATTCAAGTTGTCATGAGATTGGATTTGCTAGGGTTCCAGTGAAAGATAACTCAAGTGAAGCAATAGTAGTCTGGGATGGACTTTATTCTGATGCATTGTTGCGATGGGTTACACCTTCTTGTAGATGTGAGCCTAATCAATTTTGTGGTTTTCTATCGGATACAGATCTTAATGTTACTTGTTACACTTACGACTACGGTATTAATTTCCCAGGTGAAAATCCTTCAACTCGAAGGCGTAGGAAATTTCCCTTTTTTCCAGTAGTATGGGGAATATCAGGAACTTTGTTCTTCTTGTGGGTATCATTATCTATATATAAAGATAGGAGGCAAAACCATATTCAACAAAGACAAACAATTACAAACGTAGAACCAAATAATCGAGAACCACCTTGGTTTGTGTTTGGGCTTGATGGATCAAGGATAGAACAATATCCAAAGATTCAACTAGCAGAAAGTGGACAGTTACCTAAGTCAATTGACAATGTGTGTTCCATATGTCTTAGTGAGTATAAGCCTATGGAGACATTAAGGAGTATACCCCAATGCAATCACCATTTTCATGTTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACATGTCCTTTATGTCGAAACCTGCCAGGGTTATGA 1182 0.3596 MSTLKIYFIFSIFLLLFHSPESITPGNCVKRYCGNPELGLLFEFPFILRGRFQSYNYQSHRCGYPGFEVHCDDNKQALLKLSNDRNFVVKSISFERQRIWVNGPNDCPPQRFIENININDDLPFVWDNTYRKYYENVTFLNCSTNSAKEPNPAIDELPTISCMSNANYSIMYTLQSSLVDSLNSSCHEIGFARVPVKDNSSEAIVVWDGLYSDALLRWVTPSCRCEPNQFCGFLSDTDLNVTCYTYDYGINFPGENPSTRRRRKFPFFPVVWGISGTLFFLWVSLSIYKDRRQNHIQQRQTITNVEPNNREPPWFVFGLDGSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHVDCIDVWLKMNATCPLCRNLPGL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07986 393 Pfam Ring finger domain 345 388 IPR001841 -
Vifa1g07986 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 391 IPR013083 -
Vifa1g07986 393 CDD RING-H2_EL5-like 346 388 - -
Vifa1g07986 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 391 IPR046948 -
Vifa1g07986 393 Pfam Wall-associated receptor kinase galacturonan-binding 28 102 IPR025287 GO:0030247
Vifa1g07986 393 SMART ring_2 346 387 IPR001841 -
Vifa1g07986 393 ProSiteProfiles Zinc finger RING-type profile. 346 388 IPR001841 -
Vifa1g07986 393 SUPERFAMILY RING/U-box 345 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07986 Vifa-Chr1 1247024989 1247027584 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07986 47 392 C3H Transcription Factor Family AT2G25410 33.898 2.61e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07986 - - psat:127123903 662.144