Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07984 ATGTCTACCTTGAAATTTTCTTTCATATTTTCCATATTCCTCTTTCTTTTTCACAGTTCAACCCAACTTTGTTTTAAGAAATATTGTGGAAACCCTAAGTTAGGTCTTCTTATTGAGTTCCCTTTCATATTAAGAGATGAATATGGAAATAACAGTAATCAAAGTGATCGATGTGGATACCCAGGATTTGAAGTTCATTGTAACGATTCTAAGCAAGCTTTGCTTAAACTCTCAAATGATAGAAATTTTGTAGTCAAAAGTATTTCCATTGAGATACAAAGAATTTGGGTCAAAAGTCCCAATGATTGTCCACCCCAAAGGTTCGTTGAAAACAAAAACATCATCGATGATTCACCTTTTGCATGGGACAACTCATTTTATAGTCATTATGAAAATATAACATTTCTCAATTGTAGTACTAATTCTGCAAAGGAACCAAATCCAGTGATCGATGAACTTCCAACTATACCTTGTATGAGCAATGCAAATTATTCCATTATGTATACGTTGCAATCATCTCTTGTTAGTTCGTTGAACTCGACGTGTCATGAGATTGGTTTTGCTGAGGTTCCTGTCAAAGATAATTCACAACAACCATTGGTAATCAAGGATGGGCTTTACTCTGAAGCAATGTTGCGATGGAATACTCCTTCATGTGGTTGTGAACCTGATCAATTCTGTGGCTTTTTAACTGATACGGGTCTTAATGTTACTTGTTATAGTAACACTATTAATTTCCCAGTTGGAAATCCTTCGACTCAAAGGCATAAAAAATTTAAATTTTTTCCAGTACTTTGGGGAGTATTAGGAATTTTGTTCTTCATGTGGTGGCTATCTTTATCCATATGTAGAGATAGACAACAAAATCATATTCAACAAAGAGAGACTATTACAAACATAGAGCCAAGTAATCGAGAACCACCTTGGTTTGTGTTTGGGCTTGATAGATCAATGATAGAAGAATATCCAAAGATTCAACTAGCAGAAAGTGTACAATTACCTAAGTCAATTGACAATGTTTGTTCCATATGTCTTAGTGAGTATAAGCCTATGGAGACATTAAGGAGTATACCCCAATGCAATCATCATTTTCATGTTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACATGTCCTATATGTCGAAACCTGCCAGGGTTATGA 1167 0.3479 MSTLKFSFIFSIFLFLFHSSTQLCFKKYCGNPKLGLLIEFPFILRDEYGNNSNQSDRCGYPGFEVHCNDSKQALLKLSNDRNFVVKSISIEIQRIWVKSPNDCPPQRFVENKNIIDDSPFAWDNSFYSHYENITFLNCSTNSAKEPNPVIDELPTIPCMSNANYSIMYTLQSSLVSSLNSTCHEIGFAEVPVKDNSQQPLVIKDGLYSEAMLRWNTPSCGCEPDQFCGFLTDTGLNVTCYSNTINFPVGNPSTQRHKKFKFFPVLWGVLGILFFMWWLSLSICRDRQQNHIQQRETITNIEPSNREPPWFVFGLDRSMIEEYPKIQLAESVQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHVDCIDVWLKMNATCPICRNLPGL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07984 388 SMART ring_2 341 382 IPR001841 -
Vifa1g07984 388 Pfam Ring finger domain 340 383 IPR001841 -
Vifa1g07984 388 Pfam Wall-associated receptor kinase galacturonan-binding 24 98 IPR025287 GO:0030247
Vifa1g07984 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 386 IPR013083 -
Vifa1g07984 388 ProSiteProfiles Zinc finger RING-type profile. 341 383 IPR001841 -
Vifa1g07984 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 386 IPR046948 -
Vifa1g07984 388 CDD RING-H2_EL5-like 341 383 - -
Vifa1g07984 388 SUPERFAMILY RING/U-box 323 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07984 Vifa-Chr1 1246594565 1246596785 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07984 19 387 C3H Transcription Factor Family AT2G46495 31.926 1.13e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07984 - - psat:127123903 655.595