Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07981 ATGGATGAAACTAATAATGTTGTAGCCGACATCGATGTTAATAAATCTAAACAAATTGAACGACGTTACGAAGACTATAGAAGGAAGAGAAAGCGTCCTTGTAAAGCGCCGGTGATCCCTACGATGGAATCAACTAGCGGAGACACGGCCACGGCATCACACGGTTTTATATCGGTGATTGGACGGAGGAGGGTGATGGAAGACGCTATCAAGGTGGTTCCTCGTTTTATGGCTGCGGAACAACAACCGTGTGGATACGATTTCTTTGCGGTTTATGATGGACACGGTGGGTCGACGGTGGCGAATGCTTGTCGTGATAGGTTGCACTTGTTGTTGGCGGAGGAAGTGAAGGAGGGTAGAGATCATGGATTGGATTGGTGCAAAGCTATGTGCTCTTGTTTCATGAAGATGGATCGTGAAATTGGAGTCGGTGGTGGTGGTAGTGATGATGTTGATGCGAACAACGTGGGTTCTACGGCGGCTGTGGTGGTTGTTGGGAAAGAGGAGATCATTGTGGCGAACTGTGGTGACTCAAGGGCGGTTTTGTGTAGTGGCGGTGTAGCAGTTGCACTTTCACGTGATCATAAGCCGGATCTTCCAGATGAAAGAGAGAGGATTGAAGCAGCGGGTGGAAAAGTGATAAATTGGAACGGGAGTCGCGTTCTAGGAATTCTTGCTACTTCTAGATCCATAGGGGACCATTGCATGAAGCCATTTGTGATATCTCAACCAGAGATAAACGTGCATGGAAGAACAAAATCGGATGAGTTTGTTGTGGTGGCAAGTGATGGTCTTTGGGATGTTGTATCAAACAGTTTTGTTTGTGAAGTTGTTAAAAGCTGCCTTCAAGGTCATATGAGGAGGCATAATAGTGATAATGTAAAAGAGGCTCTCACTATTGAAGGTTATGCAGCTGAGGCTGCTGCAATTTTAGCTGAATTGGCTATGTGTAAGGGAAGCAAAGACAACATCAGTGTTATAGTCATCCAACTCAACAACACTAACATTTGA 1011 0.455 MDETNNVVADIDVNKSKQIERRYEDYRRKRKRPCKAPVIPTMESTSGDTATASHGFISVIGRRRVMEDAIKVVPRFMAAEQQPCGYDFFAVYDGHGGSTVANACRDRLHLLLAEEVKEGRDHGLDWCKAMCSCFMKMDREIGVGGGGSDDVDANNVGSTAAVVVVGKEEIIVANCGDSRAVLCSGGVAVALSRDHKPDLPDERERIEAAGGKVINWNGSRVLGILATSRSIGDHCMKPFVISQPEINVHGRTKSDEFVVVASDGLWDVVSNSFVCEVVKSCLQGHMRRHNSDNVKEALTIEGYAAEAAAILAELAMCKGSKDNISVIVIQLNNTNI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07981 336 FunFam Protein phosphatase 2C 51 46 336 - -
Vifa1g07981 336 CDD PP2Cc 53 331 IPR001932 -
Vifa1g07981 336 Pfam Protein phosphatase 2C 54 324 IPR001932 -
Vifa1g07981 336 PANTHER PROTEIN PHOSPHATASE 35 330 IPR015655 GO:0004722|GO:0006470
Vifa1g07981 336 SUPERFAMILY PP2C-like 45 333 IPR036457 -
Vifa1g07981 336 ProSiteProfiles PPM-type phosphatase domain profile. 53 331 IPR001932 -
Vifa1g07981 336 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Vifa1g07981 336 SMART PP2C_4 43 329 IPR001932 -
Vifa1g07981 336 Gene3D - 48 335 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07981 Vifa-Chr1 1245750065 1245751310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07981 48 331 PP2C-type Phosphatase Gene Family AT2G29380 46.102 8.27e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07981 K14497 - gmx:100813248 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07981 1 1245750065 1245751310 Vifa1g07981 1 1245750065 1245751310 ECH