Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07978 ATGGACGCACAGTTCCAAAACAGTTCCGATATTGGATCGTGTTTATCAAATCTCATCTTATCAACTACAACAAACACACTTGACTCTATTTTCTCTGATATTCCATCGACAAACAGCACTACCGACAACAATAACAACAACTTCTTCGGTTCTTCGAATCATGAACCCTTAGGTTCGTCTGTTTATCTTCGTCAAAGAGACATTCTTCAAAAATTCTACGAAGAAACTCGATTAACCACTTCTTTCTTTCCATCTTCATTTTCAAACAACACTTTATACACAACAACAACAACAACAACAAATTCAAGTGTGAGCGCAAGTTCGAGTTTGTTCACTTCTTTGGTGAACAACCCTTTGAAGAAAAAGCTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTTGCTGAGATTCGACTTCCTCAGAACAGAATGAGAGTTTGGCTTGGAACTTACGAAACCGCTGAAGCTGCTGCTTATGCTTATGATCGTGCAGCCTATAAGCTTCGAGGCGAATACGCGCGTTTGAATTTCCCGAATTTGAAAGATCCAACTAAGCTTGGATTCGGAGATTCTACTAAGTTGAATGCTTTGAAGAGTGCTGTGGATGCTAAGATTCAAGCTATTTGTCAGAAGGTGAAAAGGGAAAAAGCTAAGAAGATTGCAGCAAAGAAGATGAAGAAAGAGAGTGATGATAGTAAGAAGAACAAGGAGTTAGAGAAGATTAACTCCTCTTCTTGTTCTTCTTCTTCCTCTTCGTTACCGTTATCGCCTTCCATTTTCTATGAAGATTGGGTGAATGAGTTCTTTTCGCCTAATGTTTCTGATGACGGAGTTTCGAAGGGGGAGAATTCGAATTCCCCGAATTCTGTTTCGACAATGGTGACAGAGGAAACAGCGTTTGATGATTGTTCATTGGCAAGAATGCCATCTTTTGATCCTGAGTTGATTTGGGAAATTCTTGCTATATAG 975 0.3979 MDAQFQNSSDIGSCLSNLILSTTTNTLDSIFSDIPSTNSTTDNNNNNFFGSSNHEPLGSSVYLRQRDILQKFYEETRLTTSFFPSSFSNNTLYTTTTTTTNSSVSASSSLFTSLVNNPLKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKSAVDAKIQAICQKVKREKAKKIAAKKMKKESDDSKKNKELEKINSSSCSSSSSSLPLSPSIFYEDWVNEFFSPNVSDDGVSKGENSNSPNSVSTMVTEETAFDDCSLARMPSFDPELIWEILAI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07978 324 Gene3D AP2/ERF domain 123 181 IPR036955 GO:0003700|GO:0006355
Vifa1g07978 324 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Vifa1g07978 324 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Vifa1g07978 324 MobiDBLite consensus disorder prediction 224 242 - -
Vifa1g07978 324 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Vifa1g07978 324 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Vifa1g07978 324 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Vifa1g07978 324 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Vifa1g07978 324 MobiDBLite consensus disorder prediction 222 257 - -
Vifa1g07978 324 MobiDBLite consensus disorder prediction 276 295 - -
Vifa1g07978 324 SUPERFAMILY DNA-binding domain 123 180 IPR016177 GO:0003677
Vifa1g07978 324 MobiDBLite consensus disorder prediction 243 257 - -
Vifa1g07978 324 CDD AP2 122 182 IPR001471 GO:0003700|GO:0006355
Vifa1g07978 324 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 21 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07978 Vifa-Chr1 1244457713 1244458687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07978 5 323 AP2-EREBP Transcription Factor Family AT1G64380 47.175 1.87e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g07978 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07978 - - psat:127120808 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07978 1 1244457713 1244458687 Vifa1g07978 1 1244457713 1244458687 ECH