Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07974 ATGAAGTGGTCCATGTCTGCAACACAATTTGTAAACTTAAAGATCAACAAGTCTAGAAATAAAAGTTTTGGGTACATAGTGGACAGAATCAGAGATAAACTCCAAAGTTGGAAGGAAAAGACTCTATCCTATGCTGGCATAGTAACTCTTATAAAATCTATTACTCAAGCTATTCCAAAGTCATTGGTTCTTATTATTGCAATATCCATCACCATTGGAACACTCTACCTTGTTTTTAGGCCAAAGCTTCCTAAATACTCAGTAGACAGATTGAGAATAGCACAGTTCAATCTGTCTGATAATAACAATCTTTTTGTTACCTTCGATGTAACAGTAACTGCTAGAAATCCAAACAAGAAGATTGGAATATATTATGGTCATCGGAATATAACCGTGCTTAATCTACCTTTAACAGGTCAAACACAAGATGCAACTGGTTTAGTAAATACTTTGCAGCAGCAGCTGCAAGAGAAAGGTAATTTACCTCTGAATATTAAGGTGAATCAGAATGTGAGGGTTAAGATTGTTTCTCAACAATACTTCCAGAAAAAGGAAGAAGAGAAAACTATACTGCCCCAAATTTCTAAGGTGCTTTCAACTCAAGATGCCTCAAGTAGTGGAGAATATGAAACTTCAGGATCTAGTGGGTATGGTACTGGTAGTGCTGCTGGGCTTACAGGAATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCTAAGGCTACAAATAACTTTAGTTTGGATAATAAAATTGGTCAAGGTGGATTCGGAGCTGTCTATTATGCCGAACTCCGAGGCGAGAAAACAGCAATTAAGAAAATGAATGTACAAGCATCAACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCATTTGAATCTGGTGAGGTTGATTGGATATTGTGTTGAGGGATCGCTTTTCCTTGTATATGAACATATTGACAATGGAAACTTGGGTCAATATTTGCATGGTTTAGGTAAAGAGCCATTACCATGGTCTAGTAGAGTCCAAATTGCTCTAGATTCTGCAAGAGGCCTTGAATACATTCATGAACACACTGTGCCAGTTTATATCCATCGCGATGTAAAATCAGCAAACATATTGGTAGACAAAAACTTGCGGGGAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCCCCTGGGCCGAAGATTCGAAGGTGATGCAACGGAGGAGGCTGCTGGTGTTGGTGATTGTGCCGTTGATGCGAGGTGGAGGGTAATGGTTAGAGGACGACGAAGGGATGAAGGATGGAGACGGTTGACAATTGATGGTGGTGGTTGGTAA 1353 0.3917 MKWSMSATQFVNLKINKSRNKSFGYIVDRIRDKLQSWKEKTLSYAGIVTLIKSITQAIPKSLVLIIAISITIGTLYLVFRPKLPKYSVDRLRIAQFNLSDNNNLFVTFDVTVTARNPNKKIGIYYGHRNITVLNLPLTGQTQDATGLVNTLQQQLQEKGNLPLNIKVNQNVRVKIVSQQYFQKKEEEKTILPQISKVLSTQDASSSGEYETSGSSGYGTGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFGAVYYAELRGEKTAIKKMNVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGLGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILVDKNLRGKVADFGLTKLIEVGNSTLHTPLGRRFEGDATEEAAGVGDCAVDARWRVMVRGRRRDEGWRRLTIDGGGW 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07974 450 Pfam Protein tyrosine and serine/threonine kinase 249 393 IPR001245 GO:0004672|GO:0006468
Vifa1g07974 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Vifa1g07974 450 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 156 402 IPR044812 GO:0019199|GO:0045087
Vifa1g07974 450 SMART serkin_6 248 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07974 450 FunFam LysM receptor kinase 2 227 318 - -
Vifa1g07974 450 Gene3D Phosphorylase Kinase; domain 1 228 318 - -
Vifa1g07974 450 ProSitePatterns Protein kinases ATP-binding region signature. 254 276 IPR017441 GO:0005524
Vifa1g07974 450 SUPERFAMILY Protein kinase-like (PK-like) 230 399 IPR011009 -
Vifa1g07974 450 Gene3D Transferase(Phosphotransferase) domain 1 319 417 - -
Vifa1g07974 450 ProSiteProfiles Protein kinase domain profile. 248 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07974 Vifa-Chr1 1243340078 1243343149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07974 198 404 Receptor kinase-like Gene Family AT3G21630 70.531 5.48e-97 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g07974 PK_Tyr_Ser-Thr 8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07974 - K13429 tpra:123921801 383.259