Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07966 ATGGAACAGCTCCGGCATATTGGTGAGGTTCTTGGGAGTTTGAAAGCTCTGATGGTTTTACGCGATGAAATTCAGATCAATCAACGACAATGTTGTTTGATTCACGACATATTTACTCTAGCGTTTGACACGATCGCGGACGAGATAAGGCAGAATCTTAAGCTTGAAGAAAGGTCTACCAAATGGAAACCTCTTGAGATTCCTCTTAGAGAACTTTGCAGGGTTTACAAAGAAGGTGAGATATATATTAAGTATTGTTTGGAGTCAAAAGATTGGTGGGGGAAAGCACTCACACTTTCTCAGAACAGTGATTGCGTCGAGTTTCATATTCATAATTTGCTTTGTTATTTTCCTGCGGTGATCGAAGCGATTGAGAATGCTGGCGAGATGTCGGGTTTGGATCAGGATGAGAATTCGAAGAAGAAAGTTATGCTTGCTAGGAAATATGATGTGGATTGGAATGATCCAAAGCTTTTTCAGTGGAGATTTGGGAAACAGTATTTGGTTCCGAAAGAGATTTGCAAGCAATTGGAGAGTGCTTGGAGAGAAGATAGATGGAGGCTCATAGAATCAATCAAGGACAAAAAATGTTCTGCCAAATTCAATTGTTCAAAGAATGAACAAAATCTTGCAGATATGTTGTTGAAGAAACTAATGAATGGTTCCGAAAAAACAAATAATTGCAACAATAATAATAATCATAATAATCAATTATGGCCAATTGGGATTTTGTTAGGAGCCAAGGATTACCAAGTGAGGAGAAGATTGGGAAGAGGAAAAGAATATAAGGAAATTCAATGGTTAGGACAGACTTTTGCTCTGAGGTATTTTCTAGGCGAGAAAGAAGCTTACAAAAACGAGATTTCGAATTTGATATCGCTTTCTCACCCAAACATATTGCAGTATCTATGTGGTTTTTATGATGAAGAGAAGAAAGAGTTTTCTCTTGTGATGGAGTTAATGAACAAAGATTTGTGGACATACATGAAGGAGAATTGTGGTCCTAGGAGACAGATTTTGTTCTCTATACCTGTTGTGGTTGATCTCATGCTTCAAATGGCAAGAGGCATAGAATATCTTCACTCCAAAAAGATTTATCATGGAAACCTTAATCCTAATAGTATCCTACTAAGAGCTAGAAACTCACAAGAAGGTTATTTTCAAGCCAAAGTTGTAGGATTTGGTTTGTCTTCTGTGATTAATGGTGAAAACAATGCTACTAGAACTTCGCCGACGCATAATCCAATTAGTGAAGAGATTAACCCTTTAATTTGGTATGCACCTGAGGTTTTAACTGAGCTAGAACAAACGAAAAATGCTTCTACTTCTTGTAAGTACTCGGAGAAAGCTGATGCGTACAGTTTCGGTATGATATGTTTTGAGTTGTTGACGGGAAAAGTTCCTTTTGAGGATAACCATCTTCAAGGAGATAGAACTAATCAAAATATCAAAGCAGGAGAGAGACCTTTGTTTCCACACCGTTCGCCGAAATATCTTGTGAGTTTGATCAAAAAATGTTGGCAAACTGATCCGTCTCAGCGTCCTAGTTTCTCGTCTATTTGTAGGATTCTGCGCTACACGAAGAAGTTTCTTTCTATGAACACCGAGTATGTTATCATCAATCCTGAACTAAACCAGCTCGAACTTCAGAACCCACCTGTGGATTGTTGTGACATTGAAGGAACTTTCCTCAAGACTTTTCCAATAGAGAGGACAGATGATATGTGTTGTGTTGCACAAATACCATATGAAATGTTTGCTTATAAAGTTGTTGAGAAAGGGAAGATCAATAATCAGAGTCTGAATAACAGCACTATCATCAAAGATAAGAGTTGTGAGTGTGAGCCAACAAAAGATGAAGTAAATGATGATCAAAGCAAAGTTGATGGAGATATTAGTGCATCCATAATGGAAGATCAAGTAACCAACCCAAAATCAGTATCTGGTGAAACACGGTCGATATTTTCCGATAACCCCTCATTAAAGAAGAGTGTTACAATAAAGATACCATCACAAATGAAAGCAAAGAAAGACCAAGGAAATTCAAAACTACAATCATCAAGATCATTACCGCCATTATTATCTGGTCGAACTTCAAGGACAAATAAGGTGAATCAATCATCATTTGCATCAAGTCCTCTAAGCCCAGGTAAAAAGAAACCTACCATTTTCTCATCAGAATCTGAGCGCAATTCGAATATCATCAAAGGGAACCAATCACCATCAGTGTCAACTACAAGCTCAGTTAGAAGAAAAAGAAATGAAGGAGGCAATGTCTCAGATTCCAAGTCTTCTAGTTTAAAGCTGAAAACAAGAGACCAATTAACATCTAACAGTTTAAAGACAAAAAAAGCACCACTTCCTTTGAATCCTTCTTTGAGTCCAACAAGAATGAGAAGAATTAATAGTACTAATAACATCAGTGTAAGGATGCAAAAAGGGTTCATGTCAACACCTCCAATGAGTCCTTCAATGACTCCTTTAAGGACATGTACAAGCAAAAAATGTGGTCATGTTTCAGATATGGACAACGGTTTGAAGATACGAGGTAGATCGTCACCATTCGGATCGAGTCCTTTGAGTCCATACGTGATAAGAAAAACAACATGTAGCAATTTCTCTGATTCAGAGAGCAGTTTTAATATGAAAAGAGTAAGTTTATCACCATTTACAATAACCCCTTTGAGCCCGTACGTAAGAACAGCATGCGGTCATGTCTCGGATTAA 2727 0.3762 MEQLRHIGEVLGSLKALMVLRDEIQINQRQCCLIHDIFTLAFDTIADEIRQNLKLEERSTKWKPLEIPLRELCRVYKEGEIYIKYCLESKDWWGKALTLSQNSDCVEFHIHNLLCYFPAVIEAIENAGEMSGLDQDENSKKKVMLARKYDVDWNDPKLFQWRFGKQYLVPKEICKQLESAWREDRWRLIESIKDKKCSAKFNCSKNEQNLADMLLKKLMNGSEKTNNCNNNNNHNNQLWPIGILLGAKDYQVRRRLGRGKEYKEIQWLGQTFALRYFLGEKEAYKNEISNLISLSHPNILQYLCGFYDEEKKEFSLVMELMNKDLWTYMKENCGPRRQILFSIPVVVDLMLQMARGIEYLHSKKIYHGNLNPNSILLRARNSQEGYFQAKVVGFGLSSVINGENNATRTSPTHNPISEEINPLIWYAPEVLTELEQTKNASTSCKYSEKADAYSFGMICFELLTGKVPFEDNHLQGDRTNQNIKAGERPLFPHRSPKYLVSLIKKCWQTDPSQRPSFSSICRILRYTKKFLSMNTEYVIINPELNQLELQNPPVDCCDIEGTFLKTFPIERTDDMCCVAQIPYEMFAYKVVEKGKINNQSLNNSTIIKDKSCECEPTKDEVNDDQSKVDGDISASIMEDQVTNPKSVSGETRSIFSDNPSLKKSVTIKIPSQMKAKKDQGNSKLQSSRSLPPLLSGRTSRTNKVNQSSFASSPLSPGKKKPTIFSSESERNSNIIKGNQSPSVSTTSSVRRKRNEGGNVSDSKSSSLKLKTRDQLTSNSLKTKKAPLPLNPSLSPTRMRRINSTNNISVRMQKGFMSTPPMSPSMTPLRTCTSKKCGHVSDMDNGLKIRGRSSPFGSSPLSPYVIRKTTCSNFSDSESSFNMKRVSLSPFTITPLSPYVRTACGHVSD 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07966 908 Gene3D Transferase(Phosphotransferase) domain 1 247 547 - -
Vifa1g07966 908 Pfam Protein of unknown function (DUF1221) 21 223 IPR010632 -
Vifa1g07966 908 MobiDBLite consensus disorder prediction 675 785 - -
Vifa1g07966 908 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 248 525 - -
Vifa1g07966 908 SUPERFAMILY Protein kinase-like (PK-like) 247 547 IPR011009 -
Vifa1g07966 908 MobiDBLite consensus disorder prediction 639 667 - -
Vifa1g07966 908 Pfam Protein tyrosine and serine/threonine kinase 280 523 IPR001245 GO:0004672|GO:0006468
Vifa1g07966 908 FunFam Kinase family protein 247 537 - -
Vifa1g07966 908 ProSiteProfiles Protein kinase domain profile. 250 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07966 908 MobiDBLite consensus disorder prediction 639 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07966 Vifa-Chr1 1242266329 1242269149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07966 249 537 MAP Kinase Kinase Kinase AT1G14000 30.363 1.38e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Vifa1g07966 PK_Tyr_Ser-Thr 1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07966 - - psat:127120797 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07966 1 1242266329 1242269149 Vifa1g07966 1 1242266329 1242269149 ECH