Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07960 ATGGCACCTAAAAAACTCACTCTTCTTCTCAACACATACTTCCTCTTTCTCATTTTCCTCTCCCTCAAACTTTATATCAAGCCTTCAAACCCTAATTCTCATCGTGTTTCCACAAAAGTATTCAACCATGCAAGAATTCTCACTAGTGACATCATAGTTGATTCATGCAATGAACTTCATAAATACTCAAATTACACCTCCAAGTGCATTTATGTCAAAACACATCCTGATTGTAGATCAAAAGGTTACATAAACTATCTTCAAATCTTTTATTGTAACCTTGGAAGTTCACCAATTCTTGGTCACACACTACTTTTATTATGGCTTGTAGTTTTGTTCTATCTTTTAGCCGACACGGCTTCGAATTACTTTTGCACCTCCCTTGAAGGTTTGTCTAATATTTTGAGACTTTCTCCAACTATAGCTGGTGTAACATTACTCTCTCTTGGTAATGGTGCTCCTGATTTCTTTGCTAGTGTTGTTTCTTTCACAAGTTCAAATAATGGTGCAGTTGGTTTAAATAGCATTTTGGGGGGTGCATTTTTTGTTTCCACAGCTGTTTTAGGTATCATAAGTATTCTAGTTAGTTCCAATGAAGTTGCAGTTGATAAAGCTAGTTTCATTAGAGATGTCATTTTCTTCTTATTCTCTTTGTCCATTCTTCTCATCATCATTTCCATTGGTAAAATTAGCCTTTTGGGTTCAATTTGCTACCTTTCTATCTATTTTCTTTATGTTTGTGCCGTTTCGGCCACACATTTCATCTACGAAGTTGATAAAAAAGAAGTTGAGTCTTCATCGTCTTCTGATGATTTAGTTGAATCAGGCATACCATTATTAGGTTATGTCGACGATACTGATAATGATTCCGATCACAAACCAATTTCACGAAATGAAGTTGGTATTGTAATAGAGGAAAAGGAGAAGAAGAAGAATAGAGAATTGTTTTTTGGATCTTATTACTTATGGAAGTTTCTAGAAATACTCCAATTACCACTTTGTCTACCGAGAAAGCTAACTATACCTGTTGTGAGTGAGGAACAATGGTCGAAACCCTACGCAGTTATATCAGTTACCCTAGCACCAATTTTATTCGCAATTCTTTGTAATACACAAATAGAAAATGTGGACTCAAAGAGCACTTTAGTTGCATATTTAACATCATCATTAATTGGAATTGTTTTTGGAAACATGGCATGTGTGACAACAAAGAGTACAAGACCACCTAGGAGATGTTTGTTTCCTTGGCTAGCTGGTGGATTTTCAATGAGTGTGACATGGACTTATATAATTGCTGAAGAACTTGTTTCACTCTTGATATCAATTGGATATGTAATTGGTGTTAGTCCTTCAATTTTAGGGTTAACTGTTCTAGCTTGGGGAAATTCTTTAGGAGATTTGATTGCAAATGGTGCTATGGCTAAAAATGGTGGTGTTGATGGTGCACAAATTGCTGTTTCAGGTTGCTATGCTGGTCCTATGTTTAATATGTTGATGGGATTAGGGTTACCTCTTGTTCTTTCAGCTTGGAGTGAATACCCTAACTCTTATGTTGTTCCTAAGGATAGTTCACTTTTGGGGACAGTTTTGTTTTTGATGGTTGGGGTGCTTTGGTCACTTGTTGTTTTGGTTAAGAAGAATATGAGGCTTGATAAGTTTTTAGGGGCTGGTCTCTTGACCATTTACCTTTGCTTTTTGTTTTTAAGATTAGCTATGGCAATTGGTGTCCTTAATTGA 1737 0.3592 MAPKKLTLLLNTYFLFLIFLSLKLYIKPSNPNSHRVSTKVFNHARILTSDIIVDSCNELHKYSNYTSKCIYVKTHPDCRSKGYINYLQIFYCNLGSSPILGHTLLLLWLVVLFYLLADTASNYFCTSLEGLSNILRLSPTIAGVTLLSLGNGAPDFFASVVSFTSSNNGAVGLNSILGGAFFVSTAVLGIISILVSSNEVAVDKASFIRDVIFFLFSLSILLIIISIGKISLLGSICYLSIYFLYVCAVSATHFIYEVDKKEVESSSSSDDLVESGIPLLGYVDDTDNDSDHKPISRNEVGIVIEEKEKKKNRELFFGSYYLWKFLEILQLPLCLPRKLTIPVVSEEQWSKPYAVISVTLAPILFAILCNTQIENVDSKSTLVAYLTSSLIGIVFGNMACVTTKSTRPPRRCLFPWLAGGFSMSVTWTYIIAEELVSLLISIGYVIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGVDGAQIAVSGCYAGPMFNMLMGLGLPLVLSAWSEYPNSYVVPKDSSLLGTVLFLMVGVLWSLVVLVKKNMRLDKFLGAGLLTIYLCFLFLRLAMAIGVLN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07960 578 Pfam Sodium/calcium exchanger protein 417 570 IPR004837 GO:0016020|GO:0055085
Vifa1g07960 578 Pfam Sodium/calcium exchanger protein 106 248 IPR004837 GO:0016020|GO:0055085
Vifa1g07960 578 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 15 577 - -
Vifa1g07960 578 Gene3D - 137 268 IPR044880 -
Vifa1g07960 578 Gene3D - 340 571 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07960 Vifa-Chr1 1241473087 1241474823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07960 54 578 Antiporters AT5G17860 52.662 8.99e-180 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07960 K13754 - gmx:100818583 815.839