Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07957 ATGTTGTGGGTAGACAAGTATCGTCCTAAAACCCTAGACCATGTTATGCTTCACTACGATACCGCTCAAAACCTCAAAAAATTGGATGTTTCAGCTAAGAAACTAGTGTTTGCCCAAGAACAGAGGACTCTGTTGGTTGTTCCCTTAGCCGGGAGTAGATCTATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCATATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTGCAGGAAATAATCAAAGAAATGGCTAAAAATAGACCCATTGATACTAAAGGGAAGAATGGATTTAAAGTGCTTGTGCTAAATGACGTGGACAAACTCTCTAGAGAAGCCCAGCATTCTCTCCGCAGAACGATGGAGAAATATAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCCATCCGCTCCCGTTGTCTTAATGTGCGAGTAAATGCACCAAGTGAAGAACAGATTGTTGATGTTTTACAGTTCATTGGGAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTTGCCGCTCGCATAGCAGAGAAATCAAATCAGAATTTGAGGAGGGCCATATTATCATTCGAGACTTGCCGCGTCCAACAGTATCCCTTCACTGACAAACAAACAATTTCCCCAATGGACTGGGAGGAATATATTTCAGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAACTGTATGAGCTTCTAACCAATTGCATTCCTCCCGAAATCATTTTGAAGAGGCTACTTTACGAGCTATTGAGAAAACTGGATGCGGAACTTAAGCATGAAGTTTGCCATTGGGCAGCATATTATGAACATAGGATGCGCCTTGGACAGAAAGCCATTTTTCACATCGAAGCATTTGTGGCGAAGTTCATGAGCGTCTATAAATCCTTCCTCATTGCAACATTTGGTTGA 984 0.4116 MLWVDKYRPKTLDHVMLHYDTAQNLKKLDVSAKKLVFAQEQRTLLVVPLAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKNGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRVNAPSEEQIVDVLQFIGKKEGLQLPSSFAARIAEKSNQNLRRAILSFETCRVQQYPFTDKQTISPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07957 327 Pfam DNA polymerase III, delta subunit 81 160 - -
Vifa1g07957 327 SUPERFAMILY post-AAA+ oligomerization domain-like 224 319 IPR008921 GO:0003677|GO:0006260
Vifa1g07957 327 CDD HLD_clamp_RFC 162 230 - -
Vifa1g07957 327 Gene3D - 31 162 IPR027417 -
Vifa1g07957 327 Gene3D - 225 318 - -
Vifa1g07957 327 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 311 - -
Vifa1g07957 327 FunFam Replication factor C subunit 3 225 318 - -
Vifa1g07957 327 FunFam replication factor C subunit 3 163 221 - -
Vifa1g07957 327 Gene3D - 163 223 - -
Vifa1g07957 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 211 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07957 Vifa-Chr1 1240737236 1240739903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07957 1 327 Core DNA Replication Machinery Family AT5G27740 73.729 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07957 K10756 - gmx:100818329 546.584