Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07956 ATGTTGTGGGTGAAGGTGGAAAATAGGGCATGGAAAGTGGATGCCGGGAGTAGATCTATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCATATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTGCAGGAAATAATCAAAGAAATGGCTAAAAATAGACCCATTGATACTAAAGGGAAGAATGGATTTAAAGTGCTTGTGCTAAATGACGTGGACAAACTCTCTAGAGAAGCCCAGCATTCTCTCCGCAGAACGATGGAGAAATATAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCCATCCGCTCCCGTTGTCTTAATGTGCGAGTAAATGCACCAAGTGAAGAACAGATTGTTGATGTTTTACAGTTCATTGGGAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTTGCCGCTCGCATAGCAGAGAAATCAAATCAGAATTTGAGGAGGGCCATATTATCATTCGAGACTTGCCGCGTCCAACAGTATCCCTTCACTGACAAACAAACAATTTCCCCAATGGACTGGGAGGAATATATTTCAGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAACTGTATGAGCTTCTAACCAATTGCATTCCTCCCGAAATCATTTTGAAGAGGCTACTTTACGAGCTATTGAGAAAACTGGATGCGGAACTTAAGCATGAAGTTTGCCATTGGGCAGCATATTATGAACATAGGATGCGCCTTGGACAGAAAGCCATTTTTCACATCGAAGCATTTGTGGCGAAGTTCATGAGCGTCTATAAATCCTTCCTCATTGCAACATTTGGTTGA 879 0.413 MLWVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKNGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRVNAPSEEQIVDVLQFIGKKEGLQLPSSFAARIAEKSNQNLRRAILSFETCRVQQYPFTDKQTISPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07956 292 Gene3D - 5 127 IPR027417 -
Vifa1g07956 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 177 IPR027417 -
Vifa1g07956 292 SUPERFAMILY post-AAA+ oligomerization domain-like 189 284 IPR008921 GO:0003677|GO:0006260
Vifa1g07956 292 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 27 276 - -
Vifa1g07956 292 FunFam replication factor C subunit 3 128 186 - -
Vifa1g07956 292 Gene3D - 128 188 - -
Vifa1g07956 292 Pfam DNA polymerase III, delta subunit 47 125 - -
Vifa1g07956 292 CDD HLD_clamp_RFC 127 195 - -
Vifa1g07956 292 Gene3D - 190 283 - -
Vifa1g07956 292 FunFam Replication factor C subunit 3 190 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07956 Vifa-Chr1 1240737236 1240739903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07956 4 292 Core DNA Replication Machinery Family AT5G27740 85.121 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07956 K10756 - gmx:100818329 533.102