Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07951 ATGGGTCATCATTCATGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATTCGATACATTACTACTCATGGATATGGATGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGATGTGGTAAGAGTTGTCGATTGCGATGGATAAATTATTTGAGGCCTGATATTAGAAGAGGGAGATTTACACCTGAGGAAGAGAAGTTAATTATAAGTCTTCATGGAGTTGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCTGGTAGAACAGACAATGAAATAAAAAACTATTGGAATTCATGGATCAAGAAGAAAATTAGAAAATCTTCATCTTCTTCTTCTGCTCCTAATTTATCATTTAATACACCACAAACTATTGATCATCATCCTCAGTACAATTACAGTTCCAATCAACTGGAGAATTACTTTACCAACCAAGAAAATGTAACAACAAAAGAAACCTTATTTTCTTCAACGTGTCCTTTATTTATGTTCGACACAACAACAGCAACAGCAGACGCCAGTGTAATAAGACCAGAAGTGTTTTTCCATGATAACATGAATTTGAGCTCAGAATCATGGAACTTGAATCATCATCATCATCAAGTTCAGGCACTTCCTCCTCCTCCTCATCCAGCAGCAACAGCTTTTACAACCATTCATGATACTAGTAGTAATTATAATCTACCACCATTGATAGATAATAATGTGGAAAACATGGTGCCAATTGATCAAGTTCACAACAACAATGTTCTAGCTTTCTTTTCTGGGGAGAGTGTTGAAGAACCAAACTCATCAAATATTATGGGAACAAATGCAACAAATTCACTTTCTCCTTTTCCTTCTTCATTATTATGA 888 0.3694 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSSSAPNLSFNTPQTIDHHPQYNYSSNQLENYFTNQENVTTKETLFSSTCPLFMFDTTTATADASVIRPEVFFHDNMNLSSESWNLNHHHHQVQALPPPPHPAATAFTTIHDTSSNYNLPPLIDNNVENMVPIDQVHNNNVLAFFSGESVEEPNSSNIMGTNATNSLSPFPSSLL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07951 295 PANTHER MYB DOMAIN PROTEIN 55 1 267 - -
Vifa1g07951 295 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa1g07951 295 FunFam MYB transcription factor 6 66 - -
Vifa1g07951 295 CDD SANT 17 61 IPR001005 -
Vifa1g07951 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa1g07951 295 SMART sant 66 114 IPR001005 -
Vifa1g07951 295 SMART sant 13 63 IPR001005 -
Vifa1g07951 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa1g07951 295 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa1g07951 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa1g07951 295 CDD SANT 69 111 IPR001005 -
Vifa1g07951 295 MobiDBLite consensus disorder prediction 120 141 - -
Vifa1g07951 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa1g07951 295 MobiDBLite consensus disorder prediction 273 295 - -
Vifa1g07951 295 Gene3D - 69 135 - -
Vifa1g07951 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa1g07951 295 FunFam Transcription factor MYB26 68 141 - -
Vifa1g07951 295 Gene3D - 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07951 Vifa-Chr1 1240180570 1240182203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07951 1 251 MYB Transcription Factor Family AT1G63910 54.237 1.17e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g07951 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07951 K09422 K02947 gmx:100803556 326.25