Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07950 ATGATCATATCCGAGAAAAACCGTAGAGAGATCTCCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCTAAGAAGGATTTCAATTTGGCGAAGCACCCAGAGATTGATGTTCCAAATCTGCAAGTGATTAAGCTGATGCAGAGCTTTAAGTCCAAGGAATATGTGAGGGAGACTTTTGCTTGGATGCACTATTACTGGTTTTTGACTAATGATGGAATTGAGTTCCTCAGGACTTATCTCAATCTTCCATCTGAGATTGTACCAGCTACTTTGAAGAAGCAGGCTAAGCCAGCTGGTAGACCATTCGGTGGTCCACCTGGTGATCGCCCTAGAGGCCCACCTAGATTCGAGGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGTGGTCCAGGTTCCAGAGGACCTGGTGGTGAGTTTGGAGGAGACAAGGGTGGAGCTCCAGCTGACTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGACCTGGCTTTGGTCGTGGTTCTGGTGGCTTTGGAGCACCAACCAGTTCAAATGATGCTTAA 549 0.4845 MIISEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPGSRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNDA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07950 182 MobiDBLite consensus disorder prediction 112 127 - -
Vifa1g07950 182 Pfam Plectin/S10 domain 3 94 IPR005326 -
Vifa1g07950 182 Gene3D - 1 104 IPR036388 -
Vifa1g07950 182 FunFam 40S ribosomal protein S10 1 104 - -
Vifa1g07950 182 PANTHER 40S RIBOSOMAL PROTEIN S10 1 175 IPR037447 -
Vifa1g07950 182 MobiDBLite consensus disorder prediction 91 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07950 Vifa-Chr1 1239841959 1239843696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07950 1 157 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 82.166 2.86e-73 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07950 K02947 - gmx:100500445 220.705