Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07949 ATGGACAGCAAAAGCAAAGATAATAGTGATACAGATTCAATTAACAAGGTTTTCACTCACAAAGGTCGTTATGTGCAATACAGTTTGTATGGAAACTTGTTTGAAGTGTCTTCCAAATATGTTCCTCCACTTCGCCCAATCGGTAGAGGTGCTTATGGCATCGTCTGTGCGGCTGTTAATTCTGATACACGGGAGGAAGTCGCCATCAAGAAAATTGCAAATACTTTTGACAATATTATTGATGCCAAAAGGACTTTGAGGGAAATTAAGCTTCTTCGTCACATGGATCATGAAAATATTATTGCTATTAAGGATATTATAAGACCTCCACAAAAGGATGCTTTTAATGATGTTTACATTGTTTACGAATTGATGGATACGGATCTTCATCAGATTATTCGTTCGAATCAACCTCTTAATCTTGATCATTGTCAATATTTTCTATACCAGCTATTAAGGGGACTGAAATATGTGCATTCCGCGAATGTCTTGCATCGGGATCTTAAACCAAATGGTACCGAGCCCCAGAGCTGCTCCTTAATTGTTCAGAGTACACATCCGCAATCGATGTTTGGAAAAGATTATGTTCATCAACTAAGGCTTATAACTGAGTTATTAGGTTCTCCTGACGATTCGAGCCTTGGATTTCTCCGAAGTGAAAACGTGAAAAGGTATCTTAGGCAGCTTCCAAGGTTCGGGAAGCAAAATCTATCGGCGAAATTTCCTCTTATGTCCGTCGAGCCTCTAGACCTACTAGAAAAAATGCTTATATTTGATCCCGACAAACGAATTACAGTTGATGAGGCACTATGTCACCCATATCTATCATCACTTCATGACATCAATGATGAGCCAGTTATTCCCATGCCATTCAGTTTTGATTTTGAGCAGCCATCATGCACTATAGACCACATTAAGGAACTCATCTGGAGGGAATCAGTGAAGTTCAATCCGAATCCGCTGAAGCAATAA 972 0.393 MDSKSKDNSDTDSINKVFTHKGRYVQYSLYGNLFEVSSKYVPPLRPIGRGAYGIVCAAVNSDTREEVAIKKIANTFDNIIDAKRTLREIKLLRHMDHENIIAIKDIIRPPQKDAFNDVYIVYELMDTDLHQIIRSNQPLNLDHCQYFLYQLLRGLKYVHSANVLHRDLKPNGTEPQSCSLIVQSTHPQSMFGKDYVHQLRLITELLGSPDDSSLGFLRSENVKRYLRQLPRFGKQNLSAKFPLMSVEPLDLLEKMLIFDPDKRITVDEALCHPYLSSLHDINDEPVIPMPFSFDFEQPSCTIDHIKELIWRESVKFNPNPLKQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07949 323 Gene3D Phosphorylase Kinase; domain 1 290 313 - -
Vifa1g07949 323 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Vifa1g07949 323 Gene3D Transferase(Phosphotransferase) domain 1 125 171 - -
Vifa1g07949 323 Gene3D Phosphorylase Kinase; domain 1 24 124 - -
Vifa1g07949 323 ProSiteProfiles Protein kinase domain profile. 41 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07949 323 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
Vifa1g07949 323 FunFam Mitogen-activated protein kinase 26 135 - -
Vifa1g07949 323 Gene3D Transferase(Phosphotransferase) domain 1 191 289 - -
Vifa1g07949 323 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 189 276 - -
Vifa1g07949 323 Pfam Protein kinase domain 45 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07949 Vifa-Chr1 1239833338 1239834961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07949 8 318 MAP Kinase Gene Family AT4G01370 63.085 1.98e-160 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa1g07949 Pkinase 1.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07949 - K20600 gmx:100803024 479.944