Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07941 ATGTCTTCTGATATCTATACTTTTGATATTTCTTTCAACCTCCCAAATATAATCACTTATGATCCTTTCAATTTCATTGATGTAGTTGATGAGGATTTCAACAATTCTCCATACCCTTTTTCTTTCTCTTCCTCAACTACAAATAACCACGTGGTACCCCTAACAAATGGCCTATTTACAAACACTGACCTTGAAGATTATCAGATTCATAATAATAACACACTCATGGATTCCTCAAATTTTCAATGGCGTGAATTGAACTCCTCTGAAAATAGTTTCTTCACCGGACAAATAACAAGGGCAAACAGTGCAGGCGATTCTCAAACGGAGGAAGCAAAGTTGTTGAAAGTAGGGCGTTACAGTGTAGAAGAAAGAAAACAAAAAATCTCGAAATACAGAGCTAAGAGAAAACAGAGGAAGTTCAACAAAATTATTAAGTATGAATGTCGAAAGACACTAGCCGACAATAGAACACGCATACGTGGCAGATTCGCACGTAACGACGAAACCTGTAAGATTCCAAAAATTCCATCTTCAAAAACAGAAGAATATGAAGATGAATTATGGGTTGATCTGATTGAAGGATTAAATGAAAATCACACAGCATGTTTTTATTTAAGCTGA 624 0.3542 MSSDIYTFDISFNLPNIITYDPFNFIDVVDEDFNNSPYPFSFSSSTTNNHVVPLTNGLFTNTDLEDYQIHNNNTLMDSSNFQWRELNSSENSFFTGQITRANSAGDSQTEEAKLLKVGRYSVEERKQKISKYRAKRKQRKFNKIIKYECRKTLADNRTRIRGRFARNDETCKIPKIPSSKTEEYEDELWVDLIEGLNENHTACFYLS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07941 207 Pfam CCT motif 125 167 IPR010402 GO:0005515
Vifa1g07941 207 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 76 181 IPR045281 GO:0009909
Vifa1g07941 207 ProSiteProfiles CCT domain profile. 125 167 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07941 Vifa-Chr1 1239428029 1239428839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07941 91 170 C2C2-CO-like Transcription Factor Family AT5G57660 40.000 1.32e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g07941 CCT 4.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07941 - - psat:127121584 281.567