Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07939 ATGAAGATTTCAAACAAGACGAGTAATCGAAACTCAGAAGAATCATTTCTAGTTGAAAACGCAGAGCTAATCCTCCCCTGGCTAACCCATCAACAACTCGCTAATCTTTCCTTAACCTCCAAATCACTCCACAAACTCTCTCTATCCATAACCCTAAATCGCATCAAAGACGCTTCCAGAAACTTGGAGAATTTCCCAATCCCATTCCTCAACAACAACAATCACAATCAAAATCACCCTTACTCCTACTTTCTCTACACACCTTCGCTTCTTCTTTCTAACAACATCCCTCGTTACCAACCATGGGGGGACAATTCTGTAACTTCATCAAACCCTAAAACGGTTTATAATGATAATGATGATGGTGAATTGGTGAGTCTTGTTGATGTGGTGGGTTGTGACTGCGGCGAGGTTTGTGGTGATGGGTGTGGGTGTTTAGGGTTTTGGGATGATGTGGGTCGTGAATGTGGGCCGGGTTGTTTTTGTGAAGTGGGGTGTGGGAATAGGGTGAGTCGGAATGGGGTTGCGGTTAGGGTTAAGATTGTGAGGTGTGGTGGACACAAAGGCTGGGGTTTGTTTGCTGATCAGGTTGTTCATAAAGGACAGTTCTTGTTTCAATATGCAGGTGAACTATTGACAACCAAGGAAGCACAAAGGAGACAACAATACTACGATGAATTGTCATCGCGTGGTCGTTTCTCTTCTGCACTTTTAGTTGTAAGGGAGCATCTTCCATCTGGAAATGCATGTTTGAGATTGAACATAGACGCTACAAGAATAGGAAACGTTGCACGGTTCGTAAATCATTCCTGTGATGGTGGTAATTTAAGCACAAAGCTAATTAGAAGTTCAGGGGCTTTGTTCCCCCGCCTTTGCTTCTTTGCTTTGAAAGATATCCAAAAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCCAGCGGGTTGCCGTGCTACTGCAATAGCCCTTCTTGCCTTGGAACACTGCCTTCAGAAGACACTTAA 1014 0.4359 MKISNKTSNRNSEESFLVENAELILPWLTHQQLANLSLTSKSLHKLSLSITLNRIKDASRNLENFPIPFLNNNNHNQNHPYSYFLYTPSLLLSNNIPRYQPWGDNSVTSSNPKTVYNDNDDGELVSLVDVVGCDCGEVCGDGCGCLGFWDDVGRECGPGCFCEVGCGNRVSRNGVAVRVKIVRCGGHKGWGLFADQVVHKGQFLFQYAGELLTTKEAQRRQQYYDELSSRGRFSSALLVVREHLPSGNACLRLNIDATRIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFALKDIQKDEELTFSYGEIRKRSSGLPCYCNSPSCLGTLPSEDT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07939 337 ProSiteProfiles SET domain profile. 177 310 IPR001214 GO:0005515
Vifa1g07939 337 ProSiteProfiles Post-SET domain profile. 317 333 IPR003616 -
Vifa1g07939 337 Gene3D SET domain 37 318 IPR046341 -
Vifa1g07939 337 Pfam SET domain 189 310 IPR001214 GO:0005515
Vifa1g07939 337 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 55 326 - -
Vifa1g07939 337 SUPERFAMILY SET domain 65 330 IPR046341 -
Vifa1g07939 337 SMART set_7 177 316 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07939 Vifa-Chr1 1239304195 1239306434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07939 41 332 Su(var)3-9 homologs AT1G73100 26.727 8.25e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g07939 SET 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07939 K11433 - gmx:100786871 390.963