Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07938 ATGGCTGATTCGCAAGGCGGTGATGGTGGTTCGGGAACTAGGCGTGGCAAAGGTGCCAATGCTGCAAAGCGAGTCATTGCAGGAGCAACGCAAGATGTATCGGTTGTAGCGCCTTGTGGGGCGTGTAAGTTCTTGAGGAGGAAGTGTAGTAGTGGATGCATTTTTGCACCTTACTTTGGTACAGATCAAGGTGCGGCTAGGTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCGAAGCTTTTGGCCAATATTCCAACTGACCACCGCCAAGAAGCGGCGGCCACTATATCCTATGAGGCTCAGGCTAGGCTATCGGATCCGGTTTATGGTTGTGTGTCCACTATTCTTGCTCTGCAGCAACAGGTGGCAGCAATGCAAGCAGAGGTTTCTATCATGCAATCTCAACTGATGAATAGCAGATATGCATATGCAAGTACTCTTCAAACCACACACCAGCAGCAACATCAAATACTACAGCAACCAAACTTTAATGCATCTGTGCAACCAGCATACTCCAACAACTCATCGGCTTCGACCAACAACCTCGTGAACATGAACTTCAACCATGGATTTGACCTCACAATGGAGACAGCACCTTCATCTCACAGCTTAGAGCCTTTTCAAAACTCAAGGTTGTCACATTATGAGGATGATGAGTAA 669 0.4783 MADSQGGDGGSGTRRGKGANAAKRVIAGATQDVSVVAPCGACKFLRRKCSSGCIFAPYFGTDQGAARFAAVHKVFGASNVSKLLANIPTDHRQEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSIMQSQLMNSRYAYASTLQTTHQQQHQILQQPNFNASVQPAYSNNSSASTNNLVNMNFNHGFDLTMETAPSSHSLEPFQNSRLSHYEDDE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07938 222 MobiDBLite consensus disorder prediction 202 222 - -
Vifa1g07938 222 Coils Coil 118 138 - -
Vifa1g07938 222 ProSiteProfiles LOB domain profile. 37 139 IPR004883 -
Vifa1g07938 222 Pfam Lateral organ boundaries (LOB) domain 38 136 IPR004883 -
Vifa1g07938 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 36 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07938 Vifa-Chr1 1239302358 1239303558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07938 1 222 AS2 family AT3G03760 52.823 6.59e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g07938 LOB 6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07938 - - aprc:113866578 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07938 1 1239302358 1239303558 Vifa1g07938 1 1239302358 1239303558 ECH